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Results: 1 to 20 of 185

1.

Future climate scenarios for a coastal productive planktonic food web resulting in microplankton phenology changes and decreased trophic transfer efficiency.

Calbet A, Sazhin AF, Nejstgaard JC, Berger SA, Tait ZS, Olmos L, Sousoni D, Isari S, Martínez RA, Bouquet JM, Thompson EM, Båmstedt U, Jakobsen HH.

PLoS One. 2014 Apr 10;9(4):e94388. doi: 10.1371/journal.pone.0094388. eCollection 2014.

PMID:
24721992
[PubMed - in process]
Free PMC Article
2.

Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context.

Dunthorn M, Otto J, Berger SA, Stamatakis A, Mahé F, Romac S, de Vargas C, Audic S; Biomarks Consortium, Stock A, Kauff F, Stoeck T.

Mol Biol Evol. 2014 Apr;31(4):993-1009. doi: 10.1093/molbev/msu055. Epub 2014 Jan 27.

PMID:
24473288
[PubMed - in process]
3.

Multiple ITS haplotypes in the genome of the lichenized basidiomycete Cora inversa (Hygrophoraceae): fact or artifact?

Lücking R, Lawrey JD, Gillevet PM, Sikaroodi M, Dal-Forno M, Berger SA.

J Mol Evol. 2014 Feb;78(2):148-62. doi: 10.1007/s00239-013-9603-y. Epub 2013 Dec 17.

PMID:
24343640
[PubMed - in process]
4.

Metagenomic species profiling using universal phylogenetic marker genes.

Sunagawa S, Mende DR, Zeller G, Izquierdo-Carrasco F, Berger SA, Kultima JR, Coelho LP, Arumugam M, Tap J, Nielsen HB, Rasmussen S, Brunak S, Pedersen O, Guarner F, de Vos WM, Wang J, Li J, Doré J, Ehrlich SD, Stamatakis A, Bork P.

Nat Methods. 2013 Dec;10(12):1196-9. doi: 10.1038/nmeth.2693. Epub 2013 Oct 20.

PMID:
24141494
[PubMed - indexed for MEDLINE]
5.

Unraveling graft-versus-host disease and graft-versus-leukemia responses using TCR Vβ spectratype analysis in a murine bone marrow transplantation model.

Fanning SL, Zilberberg J, Stein J, Vazzana K, Berger SA, Korngold R, Friedman TM.

J Immunol. 2013 Jan 1;190(1):447-57. doi: 10.4049/jimmunol.1201641. Epub 2012 Nov 30.

PMID:
23203931
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel.

Alachiotis N, Berger SA, Stamatakis A.

BMC Bioinformatics. 2012 Aug 9;13:196. doi: 10.1186/1471-2105-13-196.

PMID:
22876807
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Elevated calpain activity in acute myelogenous leukemia correlates with decreased calpastatin expression.

Niapour M, Farr C, Minden M, Berger SA.

Blood Cancer J. 2012 Jan;2(1):e51. doi: 10.1038/bcj.2011.50. Epub 2012 Jan 13.

PMID:
22829235
[PubMed]
Free PMC Article
8.

RAxML-Light: a tool for computing terabyte phylogenies.

Stamatakis A, Aberer AJ, Goll C, Smith SA, Berger SA, Izquierdo-Carrasco F.

Bioinformatics. 2012 Aug 1;28(15):2064-6. doi: 10.1093/bioinformatics/bts309. Epub 2012 May 24.

PMID:
22628519
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

TNFα modulates protein degradation pathways in rheumatoid arthritis synovial fibroblasts.

Connor AM, Mahomed N, Gandhi R, Keystone EC, Berger SA.

Arthritis Res Ther. 2012 Mar 14;14(2):R62. doi: 10.1186/ar3778.

PMID:
22417670
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Induction of apoptosis in Eμ-myc lymphoma cells in vitro and in vivo through calpain inhibition.

Li H, Nepal RM, Martin A, Berger SA.

Exp Hematol. 2012 Jul;40(7):548-563.e2. doi: 10.1016/j.exphem.2012.02.002. Epub 2012 Feb 23.

PMID:
22366408
[PubMed - indexed for MEDLINE]
11.

Aligning short reads to reference alignments and trees.

Berger SA, Stamatakis A.

Bioinformatics. 2011 Aug 1;27(15):2068-75. doi: 10.1093/bioinformatics/btr320. Epub 2011 Jun 2.

PMID:
21636595
[PubMed - indexed for MEDLINE]
Free Article
12.

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood.

Berger SA, Krompass D, Stamatakis A.

Syst Biol. 2011 May;60(3):291-302. doi: 10.1093/sysbio/syr010. Epub 2011 Mar 23.

PMID:
21436105
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

ABC50 modulates sensitivity of HL60 leukemic cells to endoplasmic reticulum (ER) stress-induced cell death.

Yu Y, Zhang Y, Zhu Z, Berger SA.

Biochem Pharmacol. 2011 Feb 15;81(4):488-97. doi: 10.1016/j.bcp.2010.11.007. Epub 2010 Nov 16.

PMID:
21087599
[PubMed - indexed for MEDLINE]
14.

Pemphigus vulgaris: bilateral plica semilunaris involvement.

Fiore JM, Perry HD, Donnenfeld ED, Berger SA.

Cornea. 2011 Mar;30(3):357-9. doi: 10.1097/ICO.0b013e3181eadba3.

PMID:
21045669
[PubMed - indexed for MEDLINE]
15.

MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies.

Stark M, Berger SA, Stamatakis A, von Mering C.

BMC Genomics. 2010 Aug 5;11:461. doi: 10.1186/1471-2164-11-461.

PMID:
20687950
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The immunological impact of genetic drift in the B10.BR congenic inbred mouse strain.

Fanning SL, Appel MY, Berger SA, Korngold R, Friedman TM.

J Immunol. 2009 Oct 1;183(7):4261-72. doi: 10.4049/jimmunol.0900971. Epub 2009 Sep 14.

PMID:
19752227
[PubMed - indexed for MEDLINE]
Free Article
17.

Anti-tumor immunity in a model of acute myeloid leukemia.

Cheuk AT, Wells JW, Chan L, Westwood NB, Berger SA, Yagita H, Okumura K, Farzaneh F, Mufti GJ, Guinn BA.

Leuk Lymphoma. 2009 Mar;50(3):447-54. doi: 10.1080/10428190802653776.

PMID:
19197726
[PubMed - indexed for MEDLINE]
18.

Regulation of calpain activity by c-Myc through calpastatin and promotion of transformation in c-Myc-negative cells by calpastatin suppression.

Niapour M, Yu Y, Berger SA.

J Biol Chem. 2008 Aug 1;283(31):21371-81. doi: 10.1074/jbc.M801462200. Epub 2008 Jun 10.

PMID:
18544539
[PubMed - indexed for MEDLINE]
Free Article
19.

Overlap between in vitro donor antihost and in vivo posttransplantation TCR Vbeta use: a new paradigm for designer allogeneic blood and marrow transplantation.

Friedman TM, Goldgirsh K, Berger SA, Zilberberg J, Filicko-O'Hara J, Flomenberg N, Donato M, Rowley SD, Korngold R.

Blood. 2008 Oct 15;112(8):3517-25. doi: 10.1182/blood-2008-03-145391. Epub 2008 Jun 9.

PMID:
18541718
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

AID and RAG1 do not contribute to lymphomagenesis in Emu c-myc transgenic mice.

Nepal RM, Zaheen A, Basit W, Li L, Berger SA, Martin A.

Oncogene. 2008 Aug 7;27(34):4752-6. doi: 10.1038/onc.2008.111. Epub 2008 Apr 14.

PMID:
18408759
[PubMed - indexed for MEDLINE]

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