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Items: 1 to 20 of 78

1.

Spatially Resolved Genome-wide Transcriptional Profiling Identifies BMP Signaling as Essential Regulator of Zebrafish Cardiomyocyte Regeneration.

Wu CC, Kruse F, Vasudevarao MD, Junker JP, Zebrowski DC, Fischer K, Noël ES, Grün D, Berezikov E, Engel FB, van Oudenaarden A, Weidinger G, Bakkers J.

Dev Cell. 2016 Jan 11;36(1):36-49. doi: 10.1016/j.devcel.2015.12.010. Epub 2015 Dec 31.

PMID:
26748692
2.

MicroRNAs relate to early worsening of renal function in patients with acute heart failure.

Bruno N, Ter Maaten JM, Ovchinnikova ES, Vegter EL, Valente MA, van der Meer P, de Boer RA, van der Harst P, Schmitter D, Metra M, O'Connor CM, Ponikowski P, Teerlink JR, Cotter G, Davison B, Cleland JG, Givertz MM, Bloomfield DM, Dittrich HC, Pinto YM, van Veldhuisen DJ, Hillege HL, Berezikov E, Voors AA.

Int J Cardiol. 2016 Jan 15;203:564-9. doi: 10.1016/j.ijcard.2015.10.217. Epub 2015 Nov 11.

PMID:
26569364
3.

miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants.

Desvignes T, Batzel P, Berezikov E, Eilbeck K, Eppig JT, McAndrews MS, Singer A, Postlethwait JH.

Trends Genet. 2015 Nov;31(11):613-26. doi: 10.1016/j.tig.2015.09.002. Epub 2015 Oct 8. Review.

PMID:
26453491
4.

Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster.

Chereji RV, Kan TW, Grudniewska MK, Romashchenko AV, Berezikov E, Zhimulev IF, Guryev V, Morozov AV, Moshkin YM.

Nucleic Acids Res. 2015 Oct 1. pii: gkv978. [Epub ahead of print]

5.

Guanine quadruplex structures localize to heterochromatin.

Hoffmann RF, Moshkin YM, Mouton S, Grzeschik NA, Kalicharan RD, Kuipers J, Wolters AH, Nishida K, Romashchenko AV, Postberg J, Lipps H, Berezikov E, Sibon OC, Giepmans BN, Lansdorp PM.

Nucleic Acids Res. 2016 Jan 8;44(1):152-63. doi: 10.1093/nar/gkv900. Epub 2015 Sep 17.

6.

Signature of circulating microRNAs in patients with acute heart failure.

Ovchinnikova ES, Schmitter D, Vegter EL, Ter Maaten JM, Valente MA, Liu LC, van der Harst P, Pinto YM, de Boer RA, Meyer S, Teerlink JR, O'Connor CM, Metra M, Davison BA, Bloomfield DM, Cotter G, Cleland JG, Mebazaa A, Laribi S, Givertz MM, Ponikowski P, van der Meer P, van Veldhuisen DJ, Voors AA, Berezikov E.

Eur J Heart Fail. 2015 Sep 8. doi: 10.1002/ejhf.332. [Epub ahead of print]

PMID:
26345695
7.

miR-378a-3p modulates tamoxifen sensitivity in breast cancer MCF-7 cells through targeting GOLT1A.

Ikeda K, Horie-Inoue K, Ueno T, Suzuki T, Sato W, Shigekawa T, Osaki A, Saeki T, Berezikov E, Mano H, Inoue S.

Sci Rep. 2015 Aug 10;5:13170. doi: 10.1038/srep13170.

8.

Positional RNA-Seq identifies candidate genes for phenotypic engineering of sexual traits.

Arbore R, Sekii K, Beisel C, Ladurner P, Berezikov E, Schärer L.

Front Zool. 2015 Jul 3;12:14. doi: 10.1186/s12983-015-0106-0. eCollection 2015.

9.

Genome-wide RNA Tomography in the zebrafish embryo.

Junker JP, Noël ES, Guryev V, Peterson KA, Shah G, Huisken J, McMahon AP, Berezikov E, Bakkers J, van Oudenaarden A.

Cell. 2014 Oct 23;159(3):662-75. doi: 10.1016/j.cell.2014.09.038.

10.

Systemic miRNA-7 delivery inhibits tumor angiogenesis and growth in murine xenograft glioblastoma.

Babae N, Bourajjaj M, Liu Y, Van Beijnum JR, Cerisoli F, Scaria PV, Verheul M, Van Berkel MP, Pieters EH, Van Haastert RJ, Yousefi A, Mastrobattista E, Storm G, Berezikov E, Cuppen E, Woodle M, Schaapveld RQ, Prevost GP, Griffioen AW, Van Noort PI, Schiffelers RM.

Oncotarget. 2014 Aug 30;5(16):6687-700.

11.

The ctenophore genome and the evolutionary origins of neural systems.

Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB.

Nature. 2014 Jun 5;510(7503):109-14. doi: 10.1038/nature13400. Epub 2014 May 21.

12.

Biological adhesion of the flatworm Macrostomum lignano relies on a duo-gland system and is mediated by a cell type-specific intermediate filament protein.

Lengerer B, Pjeta R, Wunderer J, Rodrigues M, Arbore R, Schärer L, Berezikov E, Hess MW, Pfaller K, Egger B, Obwegeser S, Salvenmoser W, Ladurner P.

Front Zool. 2014 Feb 12;11(1):12. doi: 10.1186/1742-9994-11-12.

13.

Sex allocation adjustment to mating group size in a simultaneous hermaphrodite.

Janicke T, Marie-Orleach L, De Mulder K, Berezikov E, Ladurner P, Vizoso DB, Schärer L.

Evolution. 2013 Nov;67(11):3233-42. doi: 10.1111/evo.12189. Epub 2013 Jul 10.

PMID:
24152005
14.

Novel small RNA expression libraries uncover hsa-miR-30b and hsa-miR-30c as important factors in anoikis resistance.

Moreno-Mateos MA, Barragán V, Torres B, Rodríguez-Mateo C, Méndez-Vidal C, Berezikov E, Mudduluru G, Allgayer H, Pintor-Toro JA.

RNA. 2013 Dec;19(12):1711-25. doi: 10.1261/rna.039461.113. Epub 2013 Oct 15.

15.

The Hippo pathway regulates stem cells during homeostasis and regeneration of the flatworm Macrostomum lignano.

Demircan T, Berezikov E.

Stem Cells Dev. 2013 Aug 1;22(15):2174-85. doi: 10.1089/scd.2013.0006. Epub 2013 Apr 30.

PMID:
23495768
16.

A deep sequencing approach to uncover the miRNOME in the human heart.

Leptidis S, El Azzouzi H, Lok SI, de Weger R, Olieslagers S, Kisters N, Silva GJ, Heymans S, Cuppen E, Berezikov E, De Windt LJ, da Costa Martins P.

PLoS One. 2013;8(2):e57800. doi: 10.1371/journal.pone.0057800. Epub 2013 Feb 27. Erratum in: PLoS One. 2013;8(6). doi:10.1371/annotation/e33f9763-3385-42c7-b31e-d433dc8e499a. Olieslagers, Serv [corrected to Olieslagers, Servé].

17.

Mesodermal gene expression in the acoel Isodiametra pulchra indicates a low number of mesodermal cell types and the endomesodermal origin of the gonads.

Chiodin M, Børve A, Berezikov E, Ladurner P, Martinez P, Hejnol A.

PLoS One. 2013;8(2):e55499. doi: 10.1371/journal.pone.0055499. Epub 2013 Feb 6.

18.

piRNA dynamics in divergent zebrafish strains reveal long-lasting maternal influence on zygotic piRNA profiles.

Kaaij LJ, Hoogstrate SW, Berezikov E, Ketting RF.

RNA. 2013 Mar;19(3):345-56. doi: 10.1261/rna.036400.112. Epub 2013 Jan 18.

19.

Biolistic transformation of Caenorhabditis elegans.

Isik M, Berezikov E.

Methods Mol Biol. 2013;940:77-86. doi: 10.1007/978-1-62703-110-3_7.

PMID:
23104335
20.

The Flatworm Macrostomum lignano Is a Powerful Model Organism for Ion Channel and Stem Cell Research.

Simanov D, Mellaart-Straver I, Sormacheva I, Berezikov E.

Stem Cells Int. 2012;2012:167265. Epub 2012 Sep 11.

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