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A nonlethal sampling method to obtain, generate and assemble whole blood transcriptomes from small, wild mammals.

Huang Z, Gallot A, Lao NT, Puechmaille SJ, Foley NM, Jebb D, Bekaert M, Teeling EC.

Mol Ecol Resour. 2015 Jul 17. doi: 10.1111/1755-0998.12447. [Epub ahead of print]


The butterfly plant arms-race escalated by gene and genome duplications.

Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, Wright SI, dePamphilis CW, Eric Schranz M, Barker MS, Conant GC, Wahlberg N, Vogel H, Pires JC, Wheat CW.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8362-6. doi: 10.1073/pnas.1503926112. Epub 2015 Jun 22.


Draft Genome Sequences of Six Different Staphylococcus epidermidis Clones, Isolated Individually from Preterm Neonates Presenting with Sepsis at Edinburgh's Royal Infirmary.

Walsh P, Bekaert M, Carroll J, Manning T, Kelly B, O'Driscoll A, Lu X, Smith C, Dickinson P, Templeton K, Ghazal P, Sleator RD.

Genome Announc. 2015 May 14;3(3). pii: e00471-15. doi: 10.1128/genomeA.00471-15.


A novel sex-determining QTL in Nile tilapia (Oreochromis niloticus).

Palaiokostas C, Bekaert M, Khan MG, Taggart JB, Gharbi K, McAndrew BJ, Penman DJ.

BMC Genomics. 2015 Mar 11;16:171. doi: 10.1186/s12864-015-1383-x.


Determinants of testosterone levels in human male obesity.

Bekaert M, Van Nieuwenhove Y, Calders P, Cuvelier CA, Batens AH, Kaufman JM, Ouwens DM, Ruige JB.

Endocrine. 2015 Sep;50(1):202-11. doi: 10.1007/s12020-015-0563-4. Epub 2015 Mar 13.


Comparison of two case-based learning conditions with real patients in teaching occupational medicine.

Braeckman L, 't Kint L, Bekaert M, Cobbaut L, Janssens H.

Med Teach. 2014 Apr;36(4):340-6. doi: 10.3109/0142159X.2014.887833. Epub 2014 Feb 26.


Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar).

Houston RD, Taggart JB, Cézard T, Bekaert M, Lowe NR, Downing A, Talbot R, Bishop SC, Archibald AL, Bron JE, Penman DJ, Davassi A, Brew F, Tinch AE, Gharbi K, Hamilton A.

BMC Genomics. 2014 Feb 6;15:90. doi: 10.1186/1471-2164-15-90.


Gene duplication and phenotypic changes in the evolution of mammalian metabolic networks.

Bekaert M, Conant GC.

PLoS One. 2014 Jan 28;9(1):e87115. doi: 10.1371/journal.pone.0087115. eCollection 2014.


A cluster of olfactory receptor genes linked to frugivory in bats.

Hayden S, Bekaert M, Goodbla A, Murphy WJ, Dávalos LM, Teeling EC.

Mol Biol Evol. 2014 Apr;31(4):917-27. doi: 10.1093/molbev/msu043. Epub 2014 Jan 16.


Identification of a sex-linked SNP marker in the salmon louse (Lepeophtheirus salmonis) using RAD sequencing.

Carmichael SN, Bekaert M, Taggart JB, Christie HR, Bassett DI, Bron JE, Skuce PJ, Gharbi K, Skern-Mauritzen R, Sturm A.

PLoS One. 2013 Oct 16;8(10):e77832. doi: 10.1371/journal.pone.0077832. eCollection 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/9a5a8f89-38b6-4ba3-aceb-65aa256f6157.


Mapping the sex determination locus in the Atlantic halibut (Hippoglossus hippoglossus) using RAD sequencing.

Palaiokostas C, Bekaert M, Davie A, Cowan ME, Oral M, Taggart JB, Gharbi K, McAndrew BJ, Penman DJ, Migaud H.

BMC Genomics. 2013 Aug 20;14:566. doi: 10.1186/1471-2164-14-566.


Sequencing and characterisation of an extensive Atlantic salmon (Salmo salar L.) microRNA repertoire.

Bekaert M, Lowe NR, Bishop SC, Bron JE, Taggart JB, Houston RD.

PLoS One. 2013 Jul 29;8(7):e70136. doi: 10.1371/journal.pone.0070136. Print 2013.


Mapping and validation of the major sex-determining region in Nile tilapia (Oreochromis niloticus L.) Using RAD sequencing.

Palaiokostas C, Bekaert M, Khan MG, Taggart JB, Gharbi K, McAndrew BJ, Penman DJ.

PLoS One. 2013 Jul 11;8(7):e68389. doi: 10.1371/journal.pone.0068389. Print 2013. Erratum in: PLoS One. 2013;8(9). doi:10.1371/annotation/6320d31e-a818-445a-9c44-77a2ba5fe8e0.


Salmon lice (Lepeophtheirus salmonis) showing varying emamectin benzoate susceptibilities differ in neuronal acetylcholine receptor and GABA-gated chloride channel mRNA expression.

Carmichael SN, Bron JE, Taggart JB, Ireland JH, Bekaert M, Burgess ST, Skuce PJ, Nisbet AJ, Gharbi K, Sturm A.

BMC Genomics. 2013 Jun 18;14:408. doi: 10.1186/1471-2164-14-408.


A phylomedicine approach to understanding the evolution of auditory sensory perception and disease in mammals.

Kirwan JD, Bekaert M, Commins JM, Davies KT, Rossiter SJ, Teeling EC.

Evol Appl. 2013 Apr;6(3):412-22. doi: 10.1111/eva.12047. Epub 2013 Mar 28.


Reconstruction of Danio rerio metabolic model accounting for subcellular compartmentalisation.

Bekaert M.

PLoS One. 2012;7(11):e49903. doi: 10.1371/journal.pone.0049903. Epub 2012 Nov 14.


Dysbiosis of bifidobacteria and Clostridium cluster XIVa in the cystic fibrosis fecal microbiota.

Duytschaever G, Huys G, Bekaert M, Boulanger L, De Boeck K, Vandamme P.

J Cyst Fibros. 2013 May;12(3):206-15. doi: 10.1016/j.jcf.2012.10.003. Epub 2012 Nov 11.


Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis.

Bekaert M, Edger PP, Hudson CM, Pires JC, Conant GC.

New Phytol. 2012 Oct;196(2):596-605. doi: 10.1111/j.1469-8137.2012.04302.x. Epub 2012 Sep 4.


A simple unified approach for estimating natural direct and indirect effects.

Lange T, Vansteelandt S, Bekaert M.

Am J Epidemiol. 2012 Aug 1;176(3):190-5. doi: 10.1093/aje/kwr525. Epub 2012 Jul 10.


Sex steroid-induced changes in circulating monocyte chemoattractant protein-1 levels may contribute to metabolic dysfunction in obese men.

Ruige JB, Bekaert M, Lapauw B, Fiers T, Lehr S, Hartwig S, Herzfeld de Wiza D, Schiller M, Passlack W, Van Nieuwenhove Y, Pattyn P, Cuvelier C, Taes YE, Sell H, Eckel J, Kaufman JM, Ouwens DM.

J Clin Endocrinol Metab. 2012 Jul;97(7):E1187-91. doi: 10.1210/jc.2011-3069. Epub 2012 Apr 20.

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