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EMDomics: a robust and powerful method for the identification of genes differentially expressed between heterogeneous classes.

Nabavi S, Schmolze D, Maitituoheti M, Malladi S, Beck AH.

Bioinformatics. 2015 Oct 29. pii: btv634. [Epub ahead of print]


Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer.

Ciriello G, Gatza ML, Beck AH, Wilkerson MD, Rhie SK, Pastore A, Zhang H, McLellan M, Yau C, Kandoth C, Bowlby R, Shen H, Hayat S, Fieldhouse R, Lester SC, Tse GM, Factor RE, Collins LC, Allison KH, Chen YY, Jensen K, Johnson NB, Oesterreich S, Mills GB, Cherniack AD, Robertson G, Benz C, Sander C, Laird PW, Hoadley KA, King TA; TCGA Research Network, Perou CM.

Cell. 2015 Oct 8;163(2):506-19. doi: 10.1016/j.cell.2015.09.033.


Alcohol Consumption and Risk of Breast Cancer by Tumor Receptor Expression.

Wang J, Zhang X, Beck AH, Collins LC, Chen WY, Tamimi RM, Hazra A, Brown M, Rosner B, Hankinson SE.

Horm Cancer. 2015 Dec;6(5-6):237-46. doi: 10.1007/s12672-015-0235-0. Epub 2015 Sep 18.


Alcohol consumption and risk of breast cancer by molecular subtype: Prospective analysis of the nurses' health study after 26 years of follow-up.

Hirko KA, Chen WY, Willett WC, Rosner BA, Hankinson SE, Beck AH, Tamimi RM, Eliassen AH.

Int J Cancer. 2015 Sep 18. doi: 10.1002/ijc.29861. [Epub ahead of print]


Corrigendum: Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.

Lindström S, Thompson DJ, Paterson AD, Li J, Gierach GL, Scott C, Stone J, Douglas JA, Dos-Santos-Silva I, Fernandez-Navarro P, Verghase J, Smith P, Brown J, Luben R, Wareham NJ, Loos RJ, Heit JA, Pankratz VS, Norman A, Goode EL, Cunningham JM, deAndrade M, Vierkant RA, Czene K, Fasching PA, Baglietto L, Southey MC, Giles GG, Shah KP, Chan HP, Helvie MA, Beck AH, Knoblauch NW, Hazra A, Hunter DJ, Kraft P, Pollan M, Figueroa JD, Couch FJ, Hopper JL, Hall P, Easton DF, Boyd NF, Vachon CM, Tamimi RM.

Nat Commun. 2015 Sep 9;6:8358. doi: 10.1038/ncomms9358. No abstract available.


SPOP Promotes Ubiquitination and Degradation of the ERG Oncoprotein to Suppress Prostate Cancer Progression.

Gan W, Dai X, Lunardi A, Li Z, Inuzuka H, Liu P, Varmeh S, Zhang J, Cheng L, Sun Y, Asara JM, Beck AH, Huang J, Pandolfi PP, Wei W.

Mol Cell. 2015 Sep 17;59(6):917-30. doi: 10.1016/j.molcel.2015.07.026. Epub 2015 Sep 3.


Postmenopausal mammographic breast density and subsequent breast cancer risk according to selected tissue markers.

Yaghjyan L, Pettersson A, Colditz GA, Collins LC, Schnitt SJ, Beck AH, Rosner B, Vachon C, Tamimi RM.

Br J Cancer. 2015 Sep 29;113(7):1104-13. doi: 10.1038/bjc.2015.315. Epub 2015 Sep 3.


Chromosomal copy number alterations for associations of ductal carcinoma in situ with invasive breast cancer.

Afghahi A, Forgó E, Mitani AA, Desai M, Varma S, Seto T, Rigdon J, Jensen KC, Troxell ML, Gomez SL, Das AK, Beck AH, Kurian AW, West RB.

Breast Cancer Res. 2015 Aug 13;17:108. doi: 10.1186/s13058-015-0623-y.


Image-guided Coring for Large-scale Studies in Molecular Pathology.

Montaser-Kouhsari L, Knoblauch NW, Oh EY, Baker G, Christensen S, Hazra A, Tamimi RM, Beck AH.

Appl Immunohistochem Mol Morphol. 2015 Jul 16. [Epub ahead of print]


Extensive rewiring of epithelial-stromal co-expression networks in breast cancer.

Oh EY, Christensen SM, Ghanta S, Jeong JC, Bucur O, Glass B, Montaser-Kouhsari L, Knoblauch NW, Bertos N, Saleh SM, Haibe-Kains B, Park M, Beck AH.

Genome Biol. 2015 Jun 19;16:128. doi: 10.1186/s13059-015-0675-4.


MERIT40 Is an Akt Substrate that Promotes Resolution of DNA Damage Induced by Chemotherapy.

Brown KK, Montaser-Kouhsari L, Beck AH, Toker A.

Cell Rep. 2015 Jun 9;11(9):1358-66. doi: 10.1016/j.celrep.2015.05.004. Epub 2015 May 28.


Proceedings of the second international molecular pathological epidemiology (MPE) meeting.

Ogino S, Campbell PT, Nishihara R, Phipps AI, Beck AH, Sherman ME, Chan AT, Troester MA, Bass AJ, Fitzgerald KC, Irizarry RA, Kelsey KT, Nan H, Peters U, Poole EM, Qian ZR, Tamimi RM, Tchetgen Tchetgen EJ, Tworoger SS, Zhang X, Giovannucci EL, van den Brandt PA, Rosner BA, Wang M, Chatterjee N, Begg CB.

Cancer Causes Control. 2015 Jul;26(7):959-72. doi: 10.1007/s10552-015-0596-2. Epub 2015 May 9.


Clinically Relevant Molecular Subtypes in Leiomyosarcoma.

Guo X, Jo VY, Mills AM, Zhu SX, Lee CH, Espinosa I, Nucci MR, Varma S, Forgó E, Hastie T, Anderson S, Ganjoo K, Beck AH, West RB, Fletcher CD, van de Rijn M.

Clin Cancer Res. 2015 Aug 1;21(15):3501-11. doi: 10.1158/1078-0432.CCR-14-3141. Epub 2015 Apr 20.


Adult body size and physical activity in relation to risk of breast cancer according to tumor androgen receptor status.

Zhang X, Eliassen AH, Tamimi RM, Hazra A, Beck AH, Brown M, Collins LC, Rosner B, Hankinson SE.

Cancer Epidemiol Biomarkers Prev. 2015 Jun;24(6):962-8. doi: 10.1158/1055-9965.EPI-14-1429. Epub 2015 Apr 8.


NFAT1 promotes intratumoral neutrophil infiltration by regulating IL8 expression in breast cancer.

Kaunisto A, Henry WS, Montaser-Kouhsari L, Jaminet SC, Oh EY, Zhao L, Luo HR, Beck AH, Toker A.

Mol Oncol. 2015 Jun;9(6):1140-54. doi: 10.1016/j.molonc.2015.02.004. Epub 2015 Feb 19.


Dense and nondense mammographic area and risk of breast cancer by age and tumor characteristics.

Bertrand KA, Scott CG, Tamimi RM, Jensen MR, Pankratz VS, Norman AD, Visscher DW, Couch FJ, Shepherd J, Chen YY, Fan B, Wu FF, Ma L, Beck AH, Cummings SR, Kerlikowske K, Vachon CM.

Cancer Epidemiol Biomarkers Prev. 2015 May;24(5):798-809. doi: 10.1158/1055-9965.EPI-14-1136. Epub 2015 Feb 25.


Open access to large scale datasets is needed to translate knowledge of cancer heterogeneity into better patient outcomes.

Beck AH.

PLoS Med. 2015 Feb 24;12(2):e1001794. doi: 10.1371/journal.pmed.1001794. eCollection 2015 Feb.


Noninvasive imaging of tumor burden and molecular pathways in mouse models of cancer.

Wang Y, Tseng JC, Sun Y, Beck AH, Kung AL.

Cold Spring Harb Protoc. 2015 Feb 2;2015(2):135-44. doi: 10.1101/pdb.top069930. Review.


Crowdsourcing image annotation for nucleus detection and segmentation in computational pathology: evaluating experts, automated methods, and the crowd.

Irshad H, Montaser-Kouhsari L, Waltz G, Bucur O, Nowak JA, Dong F, Knoblauch NW, Beck AH.

Pac Symp Biocomput. 2015:294-305.

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