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Items: 1 to 20 of 65


Pipeline for amplifying and analyzing amplicons of the V1-V3 region of the 16S rRNA gene.

Allen HK, Bayles DO, Looft T, Trachsel J, Bass BE, Alt DP, Bearson SM, Nicholson T, Casey TA.

BMC Res Notes. 2016 Aug 2;9:380. doi: 10.1186/s13104-016-2172-6.


Comparison of 'HoBi'-like viral populations among persistent infected calves generated under experimental conditions and to inoculum virus.

Weber MN, Bauermann FV, Bayles DO, Canal CW, Neill JD, Ridpath JF.

Virology. 2016 May;492:225-31. doi: 10.1016/j.virol.2016.03.001. Epub 2016 Mar 21.


Analysis of Mycobacterium avium subsp. paratuberculosis Mutant Libraries Reveals Loci-dependent Transposition Biases and Strategies to Novel Mutant Discovery.

Rathnaiah G, Bannantine JP, Bayles DO, Zinniel DK, Stabel JR, Gröhn YT, Barletta RG.

Microbiology. 2016 Feb 16. doi: 10.1099/mic.0.000258. [Epub ahead of print]


Effects of Pseudorabies Virus Infection on the Tracheobronchial Lymph Node Transcriptome.

Miller LC, Bayles DO, Zanella EL, Lager KM.

Bioinform Biol Insights. 2016 Jan 24;9(Suppl 2):25-36. doi: 10.4137/BBI.S30522. eCollection 2015.


Comparative genomic analysis of the swine pathogen Bordetella bronchisepticastrain KM22.

Nicholson TL, Shore SM, Register KB, Bayles DO, Kingsley RA, Brunelle BW.

Vet Microbiol. 2016 Jan 15;182:87-94. doi: 10.1016/j.vetmic.2015.10.026. Epub 2015 Oct 31.


Draft Genome Sequences of Nine Streptococcus suis Strains Isolated in the United States.

Hau SJ, Bayles DO, Alt DP, Brockmeier SL, Frana TS, Nicholson TL.

Genome Announc. 2015 Nov 5;3(6). pii: e01301-15. doi: 10.1128/genomeA.01301-15.


Complete Genome Sequence of Coriobacteriaceae Strain 68-1-3, a Novel Mucus-Degrading Isolate from the Swine Intestinal Tract.

Looft T, Bayles DO, Alt DP, Stanton TB.

Genome Announc. 2015 Oct 8;3(5). pii: e01143-15. doi: 10.1128/genomeA.01143-15.


Comparison of the breadth and complexity of bovine viral diarrhea (BVDV) populations circulating in 34 persistently infected cattle generated in one outbreak.

Ridpath JF, Bayles DO, Neill JD, Falkenberg SM, Bauermann FV, Holler L, Braun LJ, Young DB, Kane SE, Chase CC.

Virology. 2015 Nov;485:297-304. doi: 10.1016/j.virol.2015.07.022. Epub 2015 Aug 28.


Complete Genome Sequence of Leptospira interrogans Serovar Bratislava, Strain PigK151.

Alt DP, Wilson-Welder JH, Bayles DO, Cameron C, Adler B, Bulach DM, Seemann T, Lehane MJ, Haines LR, Darby AC, Hall N, Radford AD, Zuerner RL.

Genome Announc. 2015 Jun 25;3(3). pii: e00678-15. doi: 10.1128/genomeA.00678-15.


Genome Sequences of Mannheimia haemolytica Serotype A2 Isolates D171 and D35, Recovered from Bovine Pneumonia.

Hauglund MJ, Tatum FM, Bayles DO, Maheswaran SK, Briggs RE.

Genome Announc. 2015 Mar 12;3(2). pii: e00093-15. doi: 10.1128/genomeA.00093-15.


Genome Sequences of Serotype A6 Mannheimia haemolytica Isolates D174 and D38 Recovered from Bovine Pneumonia.

Hauglund MJ, Tatum FM, Bayles DO, Maheswaran SK, Briggs RE.

Genome Announc. 2015 Mar 5;3(2). pii: e00086-15. doi: 10.1128/genomeA.00086-15.


Virulence and draft genome sequence overview of multiple strains of the swine pathogen Haemophilus parasuis.

Brockmeier SL, Register KB, Kuehn JS, Nicholson TL, Loving CL, Bayles DO, Shore SM, Phillips GJ.

PLoS One. 2014 Aug 19;9(8):e103787. doi: 10.1371/journal.pone.0103787. eCollection 2014.


Draft Genome Sequence of the Bordetella bronchiseptica Swine Isolate KM22.

Nicholson TL, Shore SM, Bayles DO, Register KB, Kingsley RA.

Genome Announc. 2014 Jul 10;2(4). pii: e00670-14. doi: 10.1128/genomeA.00670-14.


Simultaneous rapid sequencing of multiple RNA virus genomes.

Neill JD, Bayles DO, Ridpath JF.

J Virol Methods. 2014 Jun;201:68-72. doi: 10.1016/j.jviromet.2014.02.016. Epub 2014 Feb 28.


Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations.

Looft T, Allen HK, Cantarel BL, Levine UY, Bayles DO, Alt DP, Henrissat B, Stanton TB.

ISME J. 2014 Aug;8(8):1566-76. doi: 10.1038/ismej.2014.12. Epub 2014 Feb 13.


Draft Genome Sequence of a Mycobacterium avium Complex Isolate from a Broadbill Bird.

Bannantine JP, Bayles DO, Robbe-Austerman S, Burrell AM, Stabel JR.

Genome Announc. 2014 Jan 30;2(1). pii: e01268-13. doi: 10.1128/genomeA.01268-13.


Estimation of viral richness from shotgun metagenomes using a frequency count approach.

Allen HK, Bunge J, Foster JA, Bayles DO, Stanton TB.

Microbiome. 2013 Feb 4;1(1):5. doi: 10.1186/2049-2618-1-5.


Complete genome sequence of Ornithobacterium rhinotracheale strain ORT-UMN 88.

Zehr ES, Bayles DO, Boatwright WD, Tabatabai LB, Register KB.

Stand Genomic Sci. 2014 Dec 8;9:16. doi: 10.1186/1944-3277-9-16. eCollection 2014.


Non-contiguous finished genome sequence of Ornithobacterium rhinotracheale strain H06-030791.

Zehr ES, Bayles DO, Boatwright WD, Tabatabai LB, Register KB.

Stand Genomic Sci. 2014 Dec 8;9:14. doi: 10.1186/1944-3277-9-14. eCollection 2014.


Biochemical and molecular characterization of Treponema phagedenis-like spirochetes isolated from a bovine digital dermatitis lesion.

Wilson-Welder JH, Elliott MK, Zuerner RL, Bayles DO, Alt DP, Stanton TB.

BMC Microbiol. 2013 Dec 5;13:280. doi: 10.1186/1471-2180-13-280.

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