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Comparing the performance of biomedical clustering methods.

Wiwie C, Baumbach J, Röttger R.

Nat Methods. 2015 Nov;12(11):1033-8. doi: 10.1038/nmeth.3583. Epub 2015 Sep 21.


GIPSy: Genomic island prediction software.

Soares SC, Geyik H, Ramos RT, de Sá PH, Barbosa EG, Baumbach J, Figueiredo HC, Miyoshi A, Tauch A, Silva A, Azevedo V.

J Biotechnol. 2015 Sep 12. pii: S0168-1656(15)30115-2. doi: 10.1016/j.jbiotec.2015.09.008. [Epub ahead of print]


Sources of Infant Pertussis Infection in the United States.

Skoff TH, Kenyon C, Cocoros N, Liko J, Miller L, Kudish K, Baumbach J, Zansky S, Faulkner A, Martin SW.

Pediatrics. 2015 Oct;136(4):635-41. doi: 10.1542/peds.2015-1120. Epub 2015 Sep 7.


Human Plague - United States, 2015.

Kwit N, Nelson C, Kugeler K, Petersen J, Plante L, Yaglom H, Kramer V, Schwartz B, House J, Colton L, Feldpausch A, Drenzek C, Baumbach J, DiMenna M, Fisher E, Debess E, Buttke D, Weinburke M, Percy C, Schriefer M, Gage K, Mead P.

MMWR Morb Mortal Wkly Rep. 2015 Aug 28;64(33):918-9.


Pneumonia among adults hospitalized with laboratory-confirmed seasonal influenza virus infection-United States, 2005-2008.

Garg S, Jain S, Dawood FS, Jhung M, Pérez A, D'Mello T, Reingold A, Gershman K, Meek J, Arnold KE, Farley MM, Ryan P, Lynfield R, Morin C, Baumbach J, Hancock EB, Zansky S, Bennett N, Thomas A, Schaffner W, Finelli L.

BMC Infect Dis. 2015 Aug 26;15:369. doi: 10.1186/s12879-015-1004-y.


Improving Accuracy of Influenza-Associated Hospitalization Rate Estimates.

Millman AJ, Reed C, Kirley PD, Aragon D, Meek J, Farley MM, Ryan P, Collins J, Lynfield R, Baumbach J, Zansky S, Bennett NM, Fowler B, Thomas A, Lindegren ML, Atkinson A, Finelli L, Chaves SS.

Emerg Infect Dis. 2015 Sep;21(9):1595-601. doi: 10.3201/eid2109.141665.


Training in Infectious Disease Epidemiology through the Emerging Infections Program Sites.

Vugia DJ, Meek JI, Danila RN, Jones TF, Schaffner W, Baumbach J, Lathrop S, Farley MM, Tobin-D'Angelo M, Miller L, Harrison LH, Bennett NM, Cieslak PR, Cartter ML, Reingold AL.

Emerg Infect Dis. 2015 Sep;21(9):1516-9. doi: 10.3201/eid2109.150443.


Tracking Pertussis and Evaluating Control Measures through Enhanced Pertussis Surveillance, Emerging Infections Program, United States.

Skoff TH, Baumbach J, Cieslak PR.

Emerg Infect Dis. 2015 Sep;21(9):1568-73. doi: 10.3201/eid2109.150023.


Molecular mapping of five soybean genes involved in male-sterility, female-sterility.

Speth B, Rogers JP, Boonyoo N, VanMeter AJ, Baumbach J, Ott A, Moore J, Cina T, Palmer R, Sandhu D.

Genome. 2015 Apr;58(4):143-9. doi: 10.1139/gen-2015-0044. Epub 2015 Jun 18.


Measuring Compounds in Exhaled Air to Detect Alzheimer's Disease and Parkinson's Disease.

Bach JP, Gold M, Mengel D, Hattesohl A, Lubbe D, Schmid S, Tackenberg B, Rieke J, Maddula S, Baumbach JI, Nell C, Boeselt T, Michelis J, Alferink J, Heneka M, Oertel W, Jessen F, Janciauskiene S, Vogelmeier C, Dodel R, Koczulla AR.

PLoS One. 2015 Jul 13;10(7):e0132227. doi: 10.1371/journal.pone.0132227. eCollection 2015.


Carotta: Revealing Hidden Confounder Markers in Metabolic Breath Profiles.

Hauschild AC, Frisch T, Baumbach JI, Baumbach J.

Metabolites. 2015 Jun 10;5(2):344-63. doi: 10.3390/metabo5020344.


CMRegNet-An interspecies reference database for corynebacterial and mycobacterial regulatory networks.

Abreu VA, Almeida S, Tiwari S, Hassan SS, Mariano D, Silva A, Baumbach J, Azevedo V, Röttger R.

BMC Genomics. 2015 Jun 11;16:452. doi: 10.1186/s12864-015-1631-0.


Statin treatment and mortality: propensity score-matched analyses of 2007-2008 and 2009-2010 laboratory-confirmed influenza hospitalizations.

Laidler MR, Thomas A, Baumbach J, Kirley PD, Meek J, Aragon D, Morin C, Ryan PA, Schaffner W, Zansky SM, Chaves SS.

Open Forum Infect Dis. 2015 Mar 20;2(1):ofv028. doi: 10.1093/ofid/ofv028. eCollection 2015 Jan.


Dissecting the function and assembly of acentriolar microtubule organizing centers in Drosophila cells in vivo.

Baumbach J, Novak ZA, Raff JW, Wainman A.

PLoS Genet. 2015 May 28;11(5):e1005261. doi: 10.1371/journal.pgen.1005261. eCollection 2015 May.


Modeling and analysis of innate immune responses induced by the host cells against hepatitis C virus infection.

Obaid A, Ahmad J, Naz A, Awan FM, Paracha RZ, Tareen SH, Anjum S, Raza A, Baumbach J, Ali A.

Integr Biol (Camb). 2015 May;7(5):544-59. doi: 10.1039/c4ib00285g. Epub 2015 Apr 7.


Does Influenza Vaccination Modify Influenza Severity? Data on Older Adults Hospitalized With Influenza During the 2012-2013 Season in the United States.

Arriola CS, Anderson EJ, Baumbach J, Bennett N, Bohm S, Hill M, Lindegren ML, Lung K, Meek J, Mermel E, Miller L, Monroe ML, Morin C, Oni O, Reingold A, Schaffner W, Thomas A, Zansky SM, Finelli L, Chaves SS.

J Infect Dis. 2015 Oct 15;212(8):1200-8. doi: 10.1093/infdis/jiv200. Epub 2015 Mar 27.


Exhalation pattern changes during fasting and low dose glucose treatment in rats.

Fink T, Albrecht FW, Maurer F, Kleber A, Hüppe T, Schnauber K, Wolf B, Baumbach JI, Volk T, Kreuer S.

Anal Bioanal Chem. 2015 May;407(13):3763-73. doi: 10.1007/s00216-015-8602-9. Epub 2015 Mar 26.


Exhaled volatile organic compounds discriminate patients with chronic obstructive pulmonary disease from healthy subjects.

Besa V, Teschler H, Kurth I, Khan AM, Zarogoulidis P, Baumbach JI, Sommerwerck U, Freitag L, Darwiche K.

Int J Chron Obstruct Pulmon Dis. 2015 Feb 23;10:399-406. doi: 10.2147/COPD.S76212. eCollection 2015.


Influence of the respirator on volatile organic compounds: an animal study in rats over 24 hours.

Albrecht FW, Hüppe T, Fink T, Maurer F, Wolf A, Wolf B, Volk T, Baumbach JI, Kreuer S.

J Breath Res. 2015 Mar 9;9(1):016007. doi: 10.1088/1752-7155/9/1/016007.


Estimating influenza disease burden from population-based surveillance data in the United States.

Reed C, Chaves SS, Daily Kirley P, Emerson R, Aragon D, Hancock EB, Butler L, Baumbach J, Hollick G, Bennett NM, Laidler MR, Thomas A, Meltzer MI, Finelli L.

PLoS One. 2015 Mar 4;10(3):e0118369. doi: 10.1371/journal.pone.0118369. eCollection 2015.

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