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Results: 1 to 20 of 194

1.

Analysis of western lowland gorilla (Gorilla gorilla gorilla) specific Alu repeats.

McLain AT, Carman GW, Fullerton ML, Beckstrom TO, Gensler W, Meyer TJ, Faulk C, Batzer MA.

Mob DNA. 2013 Nov 22;4(1):26. doi: 10.1186/1759-8753-4-26.

PMID:
24262036
[PubMed]
Free Article
2.

APOE ϵ4, rated life experiences, and affect among centenarians.

Martin P, Jazwinski SM, Davey A, Green RC, Macdonald M, Margrett JA, Siegler IC, Arnold J, Woodard JL, Johnson MA, Kim S, Dai J, Li L, Batzer MA, Poon LW, For The Georgia Centenarian Study.

Aging Ment Health. 2014 Mar;18(2):240-7. doi: 10.1080/13607863.2013.827624. Epub 2013 Sep 2.

PMID:
23998924
[PubMed - in process]
3.

Rates and patterns of great ape retrotransposition.

Hormozdiari F, Konkel MK, Prado-Martinez J, Chiatante G, Herraez IH, Walker JA, Nelson B, Alkan C, Sudmant PH, Huddleston J, Catacchio CR, Ko A, Malig M, Baker C; Great Ape Genome Project, Marques-Bonet T, Ventura M, Batzer MA, Eichler EE.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13457-62. doi: 10.1073/pnas.1310914110. Epub 2013 Jul 24.

PMID:
23884656
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A comparison of 100 human genes using an alu element-based instability model.

Cook GW, Konkel MK, Walker JA, Bourgeois MG, Fullerton ML, Fussell JT, Herbold HD, Batzer MA.

PLoS One. 2013 Jun 3;8(6):e65188. doi: 10.1371/journal.pone.0065188. Print 2013.

PMID:
23755193
[PubMed - in process]
Free PMC Article
5.

Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations.

Witherspoon DJ, Zhang Y, Xing J, Watkins WS, Ha H, Batzer MA, Jorde LB.

Genome Res. 2013 Jul;23(7):1170-81. doi: 10.1101/gr.148973.112. Epub 2013 Apr 18.

PMID:
23599355
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genomic impact of eukaryotic transposable elements.

Arkhipova IR, Batzer MA, Brosius J, Feschotte C, Moran JV, Schmitz J, Jurka J.

Mob DNA. 2012 Nov 21;3(1):19. doi: 10.1186/1759-8753-3-19.

PMID:
23171443
[PubMed]
Free PMC Article
7.

An alu-based phylogeny of lemurs (infraorder: Lemuriformes).

McLain AT, Meyer TJ, Faulk C, Herke SW, Oldenburg JM, Bourgeois MG, Abshire CF, Roos C, Batzer MA.

PLoS One. 2012;7(8):e44035. doi: 10.1371/journal.pone.0044035. Epub 2012 Aug 28. Erratum in: PLoS One. 2012;7(8). doi:10.1371/annotation/378aaec2-599e-4cd4-8941-3a14c208b757.

PMID:
22937148
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

An Alu-based phylogeny of gibbons (hylobatidae).

Meyer TJ, McLain AT, Oldenburg JM, Faulk C, Bourgeois MG, Conlin EM, Mootnick AR, de Jong PJ, Roos C, Carbone L, Batzer MA.

Mol Biol Evol. 2012 Nov;29(11):3441-50. doi: 10.1093/molbev/mss149. Epub 2012 Jun 7.

PMID:
22683814
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons.

Carbone L, Harris RA, Mootnick AR, Milosavljevic A, Martin DI, Rocchi M, Capozzi O, Archidiacono N, Konkel MK, Walker JA, Batzer MA, de Jong PJ.

Genome Biol Evol. 2012;4(7):648-58. doi: 10.1093/gbe/evs048. Epub 2012 May 16.

PMID:
22593550
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers.

Walker JA, Konkel MK, Ullmer B, Monceaux CP, Ryder OA, Hubley R, Smit AF, Batzer MA.

Mob DNA. 2012 Apr 30;3:8. doi: 10.1186/1759-8753-3-8.

PMID:
22541534
[PubMed]
Free PMC Article
11.

Repetitive elements may comprise over two-thirds of the human genome.

de Koning AP, Gu W, Castoe TA, Batzer MA, Pollock DD.

PLoS Genet. 2011 Dec;7(12):e1002384. doi: 10.1371/journal.pgen.1002384. Epub 2011 Dec 1.

PMID:
22144907
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Alu pair exclusions in the human genome.

Cook GW, Konkel MK, Major JD 3rd, Walker JA, Han K, Batzer MA.

Mob DNA. 2011 Sep 23;2:10. doi: 10.1186/1759-8753-2-10.

PMID:
21943335
[PubMed]
Free PMC Article
13.

A comprehensive map of mobile element insertion polymorphisms in humans.

Stewart C, Kural D, Strömberg MP, Walker JA, Konkel MK, Stütz AM, Urban AE, Grubert F, Lam HY, Lee WP, Busby M, Indap AR, Garrison E, Huff C, Xing J, Snyder MP, Jorde LB, Batzer MA, Korbel JO, Marth GT; 1000 Genomes Project.

PLoS Genet. 2011 Aug;7(8):e1002236. doi: 10.1371/journal.pgen.1002236. Epub 2011 Aug 18.

PMID:
21876680
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Reading TE leaves: new approaches to the identification of transposable element insertions.

Ray DA, Batzer MA.

Genome Res. 2011 Jun;21(6):813-20. doi: 10.1101/gr.110528.110.

PMID:
21632748
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys.

Roos C, Zinner D, Kubatko LS, Schwarz C, Yang M, Meyer D, Nash SD, Xing J, Batzer MA, Brameier M, Leendertz FH, Ziegler T, Perwitasari-Farajallah D, Nadler T, Walter L, Osterholz M.

BMC Evol Biol. 2011 Mar 24;11:77. doi: 10.1186/1471-2148-11-77.

PMID:
21435245
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Complete mitochondrial genome sequences of three Crocodylus species and their comparison within the Order Crocodylia.

Meganathan PR, Dubey B, Batzer MA, Ray DA, Haque I.

Gene. 2011 Jun 1;478(1-2):35-41. doi: 10.1016/j.gene.2011.01.012. Epub 2011 Feb 17.

PMID:
21310220
[PubMed - indexed for MEDLINE]
17.

Mapping copy number variation by population-scale genome sequencing.

Mills RE, Walter K, Stewart C, Handsaker RE, Chen K, Alkan C, Abyzov A, Yoon SC, Ye K, Cheetham RK, Chinwalla A, Conrad DF, Fu Y, Grubert F, Hajirasouliha I, Hormozdiari F, Iakoucheva LM, Iqbal Z, Kang S, Kidd JM, Konkel MK, Korn J, Khurana E, Kural D, Lam HY, Leng J, Li R, Li Y, Lin CY, Luo R, Mu XJ, Nemesh J, Peckham HE, Rausch T, Scally A, Shi X, Stromberg MP, Stütz AM, Urban AE, Walker JA, Wu J, Zhang Y, Zhang ZD, Batzer MA, Ding L, Marth GT, McVean G, Sebat J, Snyder M, Wang J, Ye K, Eichler EE, Gerstein MB, Hurles ME, Lee C, McCarroll SA, Korbel JO; 1000 Genomes Project.

Nature. 2011 Feb 3;470(7332):59-65. doi: 10.1038/nature09708.

PMID:
21293372
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comparative and demographic analysis of orang-utan genomes.

Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Della Valle G, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordoñez GR, López-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK.

Nature. 2011 Jan 27;469(7331):529-33. doi: 10.1038/nature09687.

PMID:
21270892
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Molecular phylogenetic analyses of genus Crocodylus (Eusuchia, Crocodylia, Crocodylidae) and the taxonomic position of Crocodylus porosus.

Meganathan PR, Dubey B, Batzer MA, Ray DA, Haque I.

Mol Phylogenet Evol. 2010 Oct;57(1):393-402. doi: 10.1016/j.ympev.2010.06.011. Epub 2010 Jun 19.

PMID:
20601012
[PubMed - indexed for MEDLINE]
20.

Mobile element scanning (ME-Scan) by targeted high-throughput sequencing.

Witherspoon DJ, Xing J, Zhang Y, Watkins WS, Batzer MA, Jorde LB.

BMC Genomics. 2010 Jun 30;11:410. doi: 10.1186/1471-2164-11-410.

PMID:
20591181
[PubMed - indexed for MEDLINE]
Free PMC Article

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