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Can the experimental evolution programme help us elucidate the genetic basis of adaptation in nature?

Bailey SF, Bataillon T.

Mol Ecol. 2015 Sep 8. doi: 10.1111/mec.13378. [Epub ahead of print]


Inference Under a Wright-Fisher Model Using an Accurate Beta Approximation.

Tataru P, Bataillon T, Hobolth A.

Genetics. 2015 Nov;201(3):1133-41. doi: 10.1534/genetics.115.179606. Epub 2015 Aug 26.


Inference of purifying and positive selection in three subspecies of chimpanzees (Pan troglodytes) from exome sequencing.

Bataillon T, Duan J, Hvilsom C, Jin X, Li Y, Skov L, Glemin S, Munch K, Jiang T, Qian Y, Hobolth A, Wang J, Mailund T, Siegismund HR, Schierup MH.

Genome Biol Evol. 2015 Mar 30;7(4):1122-32. doi: 10.1093/gbe/evv058.


GC-Content evolution in bacterial genomes: the biased gene conversion hypothesis expands.

Lassalle F, Périan S, Bataillon T, Nesme X, Duret L, Daubin V.

PLoS Genet. 2015 Feb 6;11(2):e1004941. doi: 10.1371/journal.pgen.1004941. eCollection 2015 Feb.


Properties of selected mutations and genotypic landscapes under Fisher's geometric model.

Blanquart F, Achaz G, Bataillon T, Tenaillon O.

Evolution. 2014 Dec;68(12):3537-54. doi: 10.1111/evo.12545. Epub 2014 Nov 17.


Effects of new mutations on fitness: insights from models and data.

Bataillon T, Bailey SF.

Ann N Y Acad Sci. 2014 Jul;1320:76-92. doi: 10.1111/nyas.12460. Epub 2014 May 30. Review.


Rates of fitness decline and rebound suggest pervasive epistasis.

Perfeito L, Sousa A, Bataillon T, Gordo I.

Evolution. 2014 Jan;68(1):150-62. doi: 10.1111/evo.12234. Epub 2013 Sep 2.


Selection, genome-wide fitness effects and evolutionary rates in the model legume Medicago truncatula.

Paape T, Bataillon T, Zhou P, J Y Kono T, Briskine R, Young ND, Tiffin P.

Mol Ecol. 2013 Jul;22(13):3525-38. doi: 10.1111/mec.12329. Epub 2013 Jun 15.


As it happens: current directions in experimental evolution.

Bataillon T, Joyce P, Sniegowski P.

Biol Lett. 2013 Feb 23;9(1):20120945. doi: 10.1098/rsbl.2012.0945. Epub 2012 Oct 31.


A population genomics perspective on the emergence and adaptation of new plant pathogens in agro-ecosystems.

Stukenbrock EH, Bataillon T.

PLoS Pathog. 2012 Sep;8(9):e1002893. doi: 10.1371/journal.ppat.1002893. Epub 2012 Sep 27. No abstract available.


Contrasted patterns of selective pressure in three recent paralogous gene pairs in the Medicago genus (L.).

Ho-Huu J, Ronfort J, De Mita S, Bataillon T, Hochu I, Weber A, Chantret N.

BMC Evol Biol. 2012 Oct 1;12:195. doi: 10.1186/1471-2148-12-195.


Purifying selection and molecular adaptation in the genome of Verminephrobacter, the heritable symbiotic bacteria of earthworms.

Kjeldsen KU, Bataillon T, Pinel N, De Mita S, Lund MB, Panitz F, Bendixen C, Stahl DA, Schramm A.

Genome Biol Evol. 2012;4(3):307-15. doi: 10.1093/gbe/evs014. Epub 2012 Feb 14.


Extensive X-linked adaptive evolution in central chimpanzees.

Hvilsom C, Qian Y, Bataillon T, Li Y, Mailund T, Sallé B, Carlsen F, Li R, Zheng H, Jiang T, Jiang H, Jin X, Munch K, Hobolth A, Siegismund HR, Wang J, Schierup MH.

Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):2054-9. doi: 10.1073/pnas.1106877109. Epub 2012 Jan 23.


The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species.

Stukenbrock EH, Bataillon T, Dutheil JY, Hansen TT, Li R, Zala M, McDonald BA, Wang J, Schierup MH.

Genome Res. 2011 Dec;21(12):2157-66. doi: 10.1101/gr.118851.110. Epub 2011 Oct 12.


Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula.

Branca A, Paape TD, Zhou P, Briskine R, Farmer AD, Mudge J, Bharti AK, Woodward JE, May GD, Gentzbittel L, Ben C, Denny R, Sadowsky MJ, Ronfort J, Bataillon T, Young ND, Tiffin P.

Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):E864-70. doi: 10.1073/pnas.1104032108. Epub 2011 Sep 26.


Genomic determinants of protein evolution and polymorphism in Arabidopsis.

Slotte T, Bataillon T, Hansen TT, St Onge K, Wright SI, Schierup MH.

Genome Biol Evol. 2011;3:1210-9. doi: 10.1093/gbe/evr094. Epub 2011 Sep 16.


Cost of adaptation and fitness effects of beneficial mutations in Pseudomonas fluorescens.

Bataillon T, Zhang T, Kassen R.

Genetics. 2011 Nov;189(3):939-49. doi: 10.1534/genetics.111.130468. Epub 2011 Aug 25.


Molecular adaptation in flowering and symbiotic recognition pathways: insights from patterns of polymorphism in the legume Medicago truncatula.

De Mita S, Chantret N, Loridon K, Ronfort J, Bataillon T.

BMC Evol Biol. 2011 Aug 1;11:229. doi: 10.1186/1471-2148-11-229.


Molecular footprints of local adaptation in two Mediterranean conifers.

Grivet D, Sebastiani F, Alía R, Bataillon T, Torre S, Zabal-Aguirre M, Vendramin GG, González-Martínez SC.

Mol Biol Evol. 2011 Jan;28(1):101-16. doi: 10.1093/molbev/msq190. Epub 2010 Jul 23.

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