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AXIOME: automated exploration of microbial diversity.

Lynch MDj, Masella AP, Hall MW, Bartram AK, Neufeld JD.

Gigascience. 2013 Mar 13;2(1):3. doi: 10.1186/2047-217X-2-3.


Targeted recovery of novel phylogenetic diversity from next-generation sequence data.

Lynch MD, Bartram AK, Neufeld JD.

ISME J. 2012 Nov;6(11):2067-77. doi: 10.1038/ismej.2012.50. Epub 2012 Jul 12.


PANDAseq: paired-end assembler for illumina sequences.

Masella AP, Bartram AK, Truszkowski JM, Brown DG, Neufeld JD.

BMC Bioinformatics. 2012 Feb 14;13:31. doi: 10.1186/1471-2105-13-31.


Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads.

Bartram AK, Lynch MD, Stearns JC, Moreno-Hagelsieb G, Neufeld JD.

Appl Environ Microbiol. 2011 Jun;77(11):3846-52. doi: 10.1128/AEM.02772-10. Epub 2011 Apr 1. Erratum in: Appl Environ Microbiol. 2011 Aug;77(15):5569.

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