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Genomic correlation: harnessing the benefit of combining two unrelated populations for genomic selection.

Porto-Neto LR, Barendse W, Henshall JM, McWilliam SM, Lehnert SA, Reverter A.

Genet Sel Evol. 2015 Nov 2;47:84. doi: 10.1186/s12711-015-0162-0.


Non-additive genetic variation in growth, carcass and fertility traits of beef cattle.

Bolormaa S, Pryce JE, Zhang Y, Reverter A, Barendse W, Hayes BJ, Goddard ME.

Genet Sel Evol. 2015 Apr 2;47:26. doi: 10.1186/s12711-015-0114-8.


The genetic architecture of climatic adaptation of tropical cattle.

Porto-Neto LR, Reverter A, Prayaga KC, Chan EK, Johnston DJ, Hawken RJ, Fordyce G, Garcia JF, Sonstegard TS, Bolormaa S, Goddard ME, Burrow HM, Henshall JM, Lehnert SA, Barendse W.

PLoS One. 2014 Nov 24;9(11):e113284. doi: 10.1371/journal.pone.0113284. eCollection 2014.


SNP discovery in nonmodel organisms: strand bias and base-substitution errors reduce conversion rates.

Gonçalves da Silva A, Barendse W, Kijas JW, Barris WC, McWilliam S, Bunch RJ, McCullough R, Harrison B, Hoelzel AR, England PR.

Mol Ecol Resour. 2015 Jul;15(4):723-36. doi: 10.1111/1755-0998.12343. Epub 2014 Nov 23.


Selection signatures in worldwide sheep populations.

Fariello MI, Servin B, Tosser-Klopp G, Rupp R, Moreno C; International Sheep Genomics Consortium, San Cristobal M, Boitard S.

PLoS One. 2014 Aug 15;9(8):e103813. doi: 10.1371/journal.pone.0103813. eCollection 2014.


A marker-derived gene network reveals the regulatory role of PPARGC1A, HNF4G, and FOXP3 in intramuscular fat deposition of beef cattle.

Ramayo-Caldas Y, Fortes MR, Hudson NJ, Porto-Neto LR, Bolormaa S, Barendse W, Kelly M, Moore SS, Goddard ME, Lehnert SA, Reverter A.

J Anim Sci. 2014 Jul;92(7):2832-45. doi: 10.2527/jas.2013-7484. Epub 2014 Apr 28.


SNPs for parentage testing and traceability in globally diverse breeds of sheep.

Heaton MP, Leymaster KA, Kalbfleisch TS, Kijas JW, Clarke SM, McEwan J, Maddox JF, Basnayake V, Petrik DT, Simpson B, Smith TP, Chitko-McKown CG; International Sheep Genomics Consortium.

PLoS One. 2014 Apr 16;9(4):e94851. doi: 10.1371/journal.pone.0094851. eCollection 2014.


A multi-trait, meta-analysis for detecting pleiotropic polymorphisms for stature, fatness and reproduction in beef cattle.

Bolormaa S, Pryce JE, Reverter A, Zhang Y, Barendse W, Kemper K, Tier B, Savin K, Hayes BJ, Goddard ME.

PLoS Genet. 2014 Mar 27;10(3):e1004198. doi: 10.1371/journal.pgen.1004198. eCollection 2014 Mar.


Evidence for positive selection of taurine genes within a QTL region on chromosome X associated with testicular size in Australian Brahman cattle.

Lyons RE, Loan NT, Dierens L, Fortes MR, Kelly M, McWilliam SS, Li Y, Bunch RJ, Harrison BE, Barendse W, Lehnert SA, Moore SS.

BMC Genet. 2014 Jan 10;15:6. doi: 10.1186/1471-2156-15-6.


Detection of quantitative trait loci in Bos indicus and Bos taurus cattle using genome-wide association studies.

Bolormaa S, Pryce JE, Kemper KE, Hayes BJ, Zhang Y, Tier B, Barendse W, Reverter A, Goddard ME.

Genet Sel Evol. 2013 Oct 29;45:43. doi: 10.1186/1297-9686-45-43.


Evidence for pleiotropism and recent selection in the PLAG1 region in Australian Beef cattle.

Fortes MR, Kemper K, Sasazaki S, Reverter A, Pryce JE, Barendse W, Bunch R, McCulloch R, Harrison B, Bolormaa S, Zhang YD, Hawken RJ, Goddard ME, Lehnert SA.

Anim Genet. 2013 Dec;44(6):636-47. doi: 10.1111/age.12075. Epub 2013 Aug 5.


Accuracy of prediction of genomic breeding values for residual feed intake and carcass and meat quality traits in Bos taurus, Bos indicus, and composite beef cattle.

Bolormaa S, Pryce JE, Kemper K, Savin K, Hayes BJ, Barendse W, Zhang Y, Reich CM, Mason BA, Bunch RJ, Harrison BE, Reverter A, Herd RM, Tier B, Graser HU, Goddard ME.

J Anim Sci. 2013 Jul;91(7):3088-104. doi: 10.2527/jas.2012-5827. Epub 2013 May 8.


Genetic testing for TMEM154 mutations associated with lentivirus susceptibility in sheep.

Heaton MP, Kalbfleisch TS, Petrik DT, Simpson B, Kijas JW, Clawson ML, Chitko-McKown CG, Harhay GP, Leymaster KA; International Sheep Genomics Consortium.

PLoS One. 2013;8(2):e55490. doi: 10.1371/journal.pone.0055490. Epub 2013 Feb 11.


Estimating the effect of SNP genotype on quantitative traits from pooled DNA samples.

Henshall JM, Hawken RJ, Dominik S, Barendse W.

Genet Sel Evol. 2012 Apr 17;44:12. doi: 10.1186/1297-9686-44-12.


Variation in the XKR4 gene was significantly associated with subcutaneous rump fat thickness in indicine and composite cattle.

Porto Neto LR, Bunch RJ, Harrison BE, Barendse W.

Anim Genet. 2012 Dec;43(6):785-9. doi: 10.1111/j.1365-2052.2012.02330.x. Epub 2012 Feb 27.


Genetic variants affecting meat and milk production traits appear to have effects on reproduction traits in cattle.

Collis E, Fortes MR, Zhang Y, Tier B, Schutt K, Barendse W, Hawken R.

Anim Genet. 2012 Aug;43(4):442-6. doi: 10.1111/j.1365-2052.2011.02272.x. Epub 2011 Oct 18.


Fine-mapping the POLL locus in Brahman cattle yields the diagnostic marker CSAFG29.

Mariasegaram M, Harrison BE, Bolton JA, Tier B, Henshall JM, Barendse W, Prayaga KC.

Anim Genet. 2012 Dec;43(6):683-8. doi: 10.1111/j.1365-2052.2012.02336.x. Epub 2012 Mar 16.


Production and processing studies on calpain-system gene markers for beef tenderness: consumer assessments of eating quality.

Robinson DL, Cafe LM, McIntyre BL, Geesink GH, Barendse W, Pethick DW, Thompson JM, Polkinghorne R, Greenwood PL.

J Anim Sci. 2012 Aug;90(8):2850-60. doi: 10.2527/jas.2011-4928. Epub 2012 Feb 24.


Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection.

Kijas JW, Lenstra JA, Hayes B, Boitard S, Porto Neto LR, San Cristobal M, Servin B, McCulloch R, Whan V, Gietzen K, Paiva S, Barendse W, Ciani E, Raadsma H, McEwan J, Dalrymple B; International Sheep Genomics Consortium Members.

PLoS Biol. 2012 Feb;10(2):e1001258. doi: 10.1371/journal.pbio.1001258. Epub 2012 Feb 7.


The RIPK2 gene: a positional candidate for tick burden supported by genetic associations in cattle and immunological response of knockout mouse.

Porto Neto LR, Jonsson NN, Ingham A, Bunch RJ, Harrison BE, Barendse W; Cooperative Research Centre for Beef Genetic Technologies.

Immunogenetics. 2012 May;64(5):379-88. doi: 10.1007/s00251-012-0601-9.

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