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Results: 1 to 20 of 34

1.

Widespread intron retention in mammals functionally tunes transcriptomes.

Braunschweig U, Barbosa-Morais NL, Pan Q, Nachman EN, Alipanahi B, Gonatopoulos-Pournatzis T, Frey B, Irimia M, Blencowe BJ.

Genome Res. 2014 Nov;24(11):1774-86. doi: 10.1101/gr.177790.114. Epub 2014 Sep 25.

PMID:
25258385
[PubMed - in process]
2.

Next-generation RNA Sequencing of Archival Formalin-fixed Paraffin-embedded Urothelial Bladder Cancer.

Liu Y, Noon AP, Aguiar Cabeza E, Shen J, Kuk C, Ilczynski C, Ni R, Sukhu B, Chan K, Barbosa-Morais NL, Hermanns T, Blencowe BJ, Azad A, van der Kwast TH, Catto JW, Zlotta AR, Wrana JL.

Eur Urol. 2014 Sep 5. pii: S0302-2838(14)00735-0. doi: 10.1016/j.eururo.2014.07.045. [Epub ahead of print]

PMID:
25199720
[PubMed - as supplied by publisher]
3.

Trypanosoma brucei histone H1 inhibits RNA polymerase I transcription and is important for parasite fitness in vivo.

Pena AC, Pimentel MR, Manso H, Vaz-Drago R, Pinto-Neves D, Aresta-Branco F, Rijo-Ferreira F, Guegan F, Pedro Coelho L, Carmo-Fonseca M, Barbosa-Morais NL, Figueiredo LM.

Mol Microbiol. 2014 Aug;93(4):645-63. doi: 10.1111/mmi.12677. Epub 2014 Jul 14.

PMID:
24946224
[PubMed - in process]
4.

MBNL proteins repress ES-cell-specific alternative splicing and reprogramming.

Han H, Irimia M, Ross PJ, Sung HK, Alipanahi B, David L, Golipour A, Gabut M, Michael IP, Nachman EN, Wang E, Trcka D, Thompson T, O'Hanlon D, Slobodeniuc V, Barbosa-Morais NL, Burge CB, Moffat J, Frey BJ, Nagy A, Ellis J, Wrana JL, Blencowe BJ.

Nature. 2013 Jun 13;498(7453):241-5. doi: 10.1038/nature12270. Epub 2013 Jun 5.

PMID:
23739326
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The evolutionary landscape of alternative splicing in vertebrate species.

Barbosa-Morais NL, Irimia M, Pan Q, Xiong HY, Gueroussov S, Lee LJ, Slobodeniuc V, Kutter C, Watt S, Colak R, Kim T, Misquitta-Ali CM, Wilson MD, Kim PM, Odom DT, Frey BJ, Blencowe BJ.

Science. 2012 Dec 21;338(6114):1587-93. doi: 10.1126/science.1230612.

PMID:
23258890
[PubMed - indexed for MEDLINE]
6.

Latent regulatory potential of human-specific repetitive elements.

Ward MC, Wilson MD, Barbosa-Morais NL, Schmidt D, Stark R, Pan Q, Schwalie PC, Menon S, Lukk M, Watt S, Thybert D, Kutter C, Kirschner K, Flicek P, Blencowe BJ, Odom DT.

Mol Cell. 2013 Jan 24;49(2):262-72. doi: 10.1016/j.molcel.2012.11.013. Epub 2012 Dec 13.

PMID:
23246434
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The importance of platform annotation in interpreting microarray data.

Dunning MJ, Curtis C, Barbosa-Morais NL, Caldas C, Tavaré S, Lynch AG.

Lancet Oncol. 2010 Aug;11(8):717. doi: 10.1016/S1470-2045(10)70115-7. No abstract available.

PMID:
20688273
[PubMed - indexed for MEDLINE]
8.

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data.

Barbosa-Morais NL, Dunning MJ, Samarajiwa SA, Darot JF, Ritchie ME, Lynch AG, Tavaré S.

Nucleic Acids Res. 2010 Jan;38(3):e17. doi: 10.1093/nar/gkp942. Epub 2009 Nov 18.

PMID:
19923232
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Isolation of stool-derived mucus provides a high yield of colonocytes suitable for early detection of colorectal carcinoma.

White V, Scarpini C, Barbosa-Morais NL, Ikelle E, Carter S, Laskey RA, Miller R, Coleman N.

Cancer Epidemiol Biomarkers Prev. 2009 Jul;18(7):2006-13. doi: 10.1158/1055-9965.EPI-08-1145.

PMID:
19589912
[PubMed - indexed for MEDLINE]
Free Article
10.

Considerations for the processing and analysis of GoldenGate-based two-colour Illumina platforms.

Lynch AG, Dunning MJ, Iddawela M, Barbosa-Morais NL, Ritchie ME.

Stat Methods Med Res. 2009 Oct;18(5):437-52. doi: 10.1177/0962280208099451. Epub 2009 Jan 19.

PMID:
19153169
[PubMed - indexed for MEDLINE]
11.

Association of ESR1 gene tagging SNPs with breast cancer risk.

Dunning AM, Healey CS, Baynes C, Maia AT, Scollen S, Vega A, Rodríguez R, Barbosa-Morais NL, Ponder BA; SEARCH, Low YL, Bingham S; EPIC, Haiman CA, Le Marchand L; MEC, Broeks A, Schmidt MK; ABCS, Hopper J, Southey M; ABCFS, Beckmann MW, Fasching PA; BBCC, Peto J, Johnson N; BBCS, Bojesen SE, Nordestgaard B; CGPS, Milne RL, Benitez J; CNIO-BCS, Hamann U, Ko Y; GENICA, Schmutzler RK, Burwinkel B; GC-HBOC, Schürmann P, Dörk T; HABCS, Heikkinen T, Nevanlinna H; HEBCS, Lindblom A, Margolin S; KARBAC, Mannermaa A, Kosma VM; KBCS, Chen X, Spurdle A; kConFab and the AOCS Management Group, Change-Claude J, Flesch-Janys D; MARIE, Couch FJ, Olson JE; for MCBCS, Severi G, Baglietto L; MCCS, Børresen-Dale AL, Kristensen V; NBCS, Hunter DJ, Hankinson SE; NHS, Devilee P, Vreeswijk M; ORIGO, Lissowska J, Brinton L; PBCS, Liu J, Hall P; SASBAC, Kang D, Yoo KY; SEBCS, Shen CY, Yu JC; TWBCS, Anton-Culver H, Ziogoas A; UCIBCS, Sigurdson A, Struewing J; USRTS, Easton DF, Garcia-Closas M, Humphreys MK, Morrison J, Pharoah PD, Pooley KA, Chenevix-Trench G; BCAC.

Hum Mol Genet. 2009 Mar 15;18(6):1131-9. doi: 10.1093/hmg/ddn429. Epub 2009 Jan 6.

PMID:
19126777
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Species-specific transcription in mice carrying human chromosome 21.

Wilson MD, Barbosa-Morais NL, Schmidt D, Conboy CM, Vanes L, Tybulewicz VL, Fisher EM, Tavaré S, Odom DT.

Science. 2008 Oct 17;322(5900):434-8. doi: 10.1126/science.1160930. Epub 2008 Sep 11.

PMID:
18787134
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Spike-in validation of an Illumina-specific variance-stabilizing transformation.

Dunning MJ, Ritchie ME, Barbosa-Morais NL, Tavaré S, Lynch AG.

BMC Res Notes. 2008 Jun 4;1:18. doi: 10.1186/1756-0500-1-18.

PMID:
18710543
[PubMed]
Free PMC Article
14.

Tissue-specific splicing factor gene expression signatures.

Grosso AR, Gomes AQ, Barbosa-Morais NL, Caldeira S, Thorne NP, Grech G, von Lindern M, Carmo-Fonseca M.

Nucleic Acids Res. 2008 Sep;36(15):4823-32. doi: 10.1093/nar/gkn463. Epub 2008 Jul 24.

PMID:
18653532
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Pediatric malignant germ cell tumors show characteristic transcriptome profiles.

Palmer RD, Barbosa-Morais NL, Gooding EL, Muralidhar B, Thornton CM, Pett MR, Roberts I, Schneider DT, Thorne N, Tavaré S, Nicholson JC, Coleman N; Children's Cancer and Leukaemia Group.

Cancer Res. 2008 Jun 1;68(11):4239-47. doi: 10.1158/0008-5472.CAN-07-5560.

PMID:
18519683
[PubMed - indexed for MEDLINE]
Free Article
16.

Statistical issues in the analysis of Illumina data.

Dunning MJ, Barbosa-Morais NL, Lynch AG, Tavaré S, Ritchie ME.

BMC Bioinformatics. 2008 Feb 6;9:85. doi: 10.1186/1471-2105-9-85.

PMID:
18254947
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Association of single-nucleotide polymorphisms in the cell cycle genes with breast cancer in the British population.

Driver KE, Song H, Lesueur F, Ahmed S, Barbosa-Morais NL, Tyrer JP, Ponder BA, Easton DF, Pharoah PD, Dunning AM; Studies in Epidemiology and Risks of Cancer Heredity (SEARCH) Team.

Carcinogenesis. 2008 Feb;29(2):333-41. doi: 10.1093/carcin/bgm284. Epub 2008 Jan 3.

PMID:
18174243
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Cell cycle genes are the evolutionarily conserved targets of the E2F4 transcription factor.

Conboy CM, Spyrou C, Thorne NP, Wade EJ, Barbosa-Morais NL, Wilson MD, Bhattacharjee A, Young RA, Tavaré S, Lees JA, Odom DT.

PLoS One. 2007 Oct 24;2(10):e1061.

PMID:
17957245
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer.

Chin SF, Teschendorff AE, Marioni JC, Wang Y, Barbosa-Morais NL, Thorne NP, Costa JL, Pinder SE, van de Wiel MA, Green AR, Ellis IO, Porter PL, Tavaré S, Brenton JD, Ylstra B, Caldas C.

Genome Biol. 2007;8(10):R215.

PMID:
17925008
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype.

Blenkiron C, Goldstein LD, Thorne NP, Spiteri I, Chin SF, Dunning MJ, Barbosa-Morais NL, Teschendorff AE, Green AR, Ellis IO, Tavaré S, Caldas C, Miska EA.

Genome Biol. 2007;8(10):R214.

PMID:
17922911
[PubMed - indexed for MEDLINE]
Free PMC Article

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