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Results: 18

1.

Numerical spatio-temporal characterization of Listeria monocytogenes biofilms.

Mosquera-Fernández M, Rodríguez-López P, Cabo ML, Balsa-Canto E.

Int J Food Microbiol. 2014 Jul 16;182-183:26-36. doi: 10.1016/j.ijfoodmicro.2014.05.005. Epub 2014 May 11.

PMID:
24858448
[PubMed - indexed for MEDLINE]
2.

Global dynamic optimization approach to predict activation in metabolic pathways.

de Hijas-Liste GM, Klipp E, Balsa-Canto E, Banga JR.

BMC Syst Biol. 2014 Jan 6;8:1. doi: 10.1186/1752-0509-8-1.

PMID:
24393148
[PubMed - in process]
Free PMC Article
3.

Reverse-engineering post-transcriptional regulation of gap genes in Drosophila melanogaster.

Becker K, Balsa-Canto E, Cicin-Sain D, Hoermann A, Janssens H, Banga JR, Jaeger J.

PLoS Comput Biol. 2013 Oct;9(10):e1003281. doi: 10.1371/journal.pcbi.1003281. Epub 2013 Oct 31.

PMID:
24204230
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Dynamic optimization of distributed biological systems using robust and efficient numerical techniques.

Vilas C, Balsa-Canto E, García MS, Banga JR, Alonso AA.

BMC Syst Biol. 2012 Jul 2;6:79. doi: 10.1186/1752-0509-6-79.

PMID:
22748139
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Global optimization in systems biology: stochastic methods and their applications.

Balsa-Canto E, Banga JR, Egea JA, Fernandez-Villaverde A, de Hijas-Liste GM.

Adv Exp Med Biol. 2012;736:409-24. doi: 10.1007/978-1-4419-7210-1_24.

PMID:
22161343
[PubMed - indexed for MEDLINE]
6.

Structural identifiability of systems biology models: a critical comparison of methods.

Chis OT, Banga JR, Balsa-Canto E.

PLoS One. 2011;6(11):e27755. doi: 10.1371/journal.pone.0027755. Epub 2011 Nov 22.

PMID:
22132135
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

GenSSI: a software toolbox for structural identifiability analysis of biological models.

Chiş O, Banga JR, Balsa-Canto E.

Bioinformatics. 2011 Sep 15;27(18):2610-1. doi: 10.1093/bioinformatics/btr431. Epub 2011 Jul 22.

PMID:
21784792
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Use of a generalized fisher equation for global optimization in chemical kinetics.

Villaverde AF, Ross J, Morán F, Balsa-Canto E, Banga JR.

J Phys Chem A. 2011 Aug 4;115(30):8426-36. doi: 10.1021/jp203158r. Epub 2011 Jul 14.

PMID:
21711023
[PubMed - indexed for MEDLINE]
9.

AMIGO, a toolbox for advanced model identification in systems biology using global optimization.

Balsa-Canto E, Banga JR.

Bioinformatics. 2011 Aug 15;27(16):2311-3. doi: 10.1093/bioinformatics/btr370. Epub 2011 Jun 17.

PMID:
21685047
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Investigating dynamics of inhibitory and feedback loops in ERK signalling using power-law models.

Vera J, Rath O, Balsa-Canto E, Banga JR, Kolch W, Wolkenhauer O.

Mol Biosyst. 2010 Nov;6(11):2174-91. doi: 10.1039/c0mb00018c. Epub 2010 Aug 18.

PMID:
20717620
[PubMed - indexed for MEDLINE]
11.

Generic parameterization for a pharmacokinetic model to predict Cd concentrations in several tissues of different fish species.

Franco-Uría A, Otero-Muras I, Balsa-Canto E, Alonso AA, Roca E.

Chemosphere. 2010 Apr;79(4):377-86. doi: 10.1016/j.chemosphere.2010.02.010. Epub 2010 Mar 3.

PMID:
20202672
[PubMed - indexed for MEDLINE]
12.

An iterative identification procedure for dynamic modeling of biochemical networks.

Balsa-Canto E, Alonso AA, Banga JR.

BMC Syst Biol. 2010 Feb 17;4:11. doi: 10.1186/1752-0509-4-11.

PMID:
20163703
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

DOTcvpSB, a software toolbox for dynamic optimization in systems biology.

Hirmajer T, Balsa-Canto E, Banga JR.

BMC Bioinformatics. 2009 Jun 29;10:199. doi: 10.1186/1471-2105-10-199.

PMID:
19558728
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Parameter estimation and optimal experimental design.

Banga JR, Balsa-Canto E.

Essays Biochem. 2008;45:195-209. doi: 10.1042/BSE0450195. Review.

PMID:
18793133
[PubMed - indexed for MEDLINE]
15.

Computational procedures for optimal experimental design in biological systems.

Balsa-Canto E, Alonso AA, Banga JR.

IET Syst Biol. 2008 Jul;2(4):163-72. doi: 10.1049/iet-syb:20070069.

PMID:
18681746
[PubMed - indexed for MEDLINE]
16.

Hybrid optimization method with general switching strategy for parameter estimation.

Balsa-Canto E, Peifer M, Banga JR, Timmer J, Fleck C.

BMC Syst Biol. 2008 Mar 24;2:26. doi: 10.1186/1752-0509-2-26.

PMID:
18366722
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Power-law models of signal transduction pathways.

Vera J, Balsa-Canto E, Wellstead P, Banga JR, Wolkenhauer O.

Cell Signal. 2007 Jul;19(7):1531-41. Epub 2007 Feb 16.

PMID:
17399948
[PubMed - indexed for MEDLINE]
18.

Dynamic optimization of bioprocesses: efficient and robust numerical strategies.

Banga JR, Balsa-Canto E, Moles CG, Alonso AA.

J Biotechnol. 2005 Jun 29;117(4):407-19.

PMID:
15888349
[PubMed - indexed for MEDLINE]

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