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Results: 1 to 20 of 69

1.

The genome of a Late Pleistocene human from a Clovis burial site in western Montana.

Rasmussen M, Anzick SL, Waters MR, Skoglund P, DeGiorgio M, Stafford TW Jr, Rasmussen S, Moltke I, Albrechtsen A, Doyle SM, Poznik GD, Gudmundsdottir V, Yadav R, Malaspinas AS, White SS 5th, Allentoft ME, Cornejo OE, Tambets K, Eriksson A, Heintzman PD, Karmin M, Korneliussen TS, Meltzer DJ, Pierre TL, Stenderup J, Saag L, Warmuth VM, Lopes MC, Malhi RS, Brunak S, Sicheritz-Ponten T, Barnes I, Collins M, Orlando L, Balloux F, Manica A, Gupta R, Metspalu M, Bustamante CD, Jakobsson M, Nielsen R, Willerslev E.

Nature. 2014 Feb 13;506(7487):225-9. doi: 10.1038/nature13025.

PMID:
24522598
[PubMed - indexed for MEDLINE]
2.

Deep sequencing of viral genomes provides insight into the evolution and pathogenesis of varicella zoster virus and its vaccine in humans.

Depledge DP, Kundu S, Jensen NJ, Gray ER, Jones M, Steinberg S, Gershon A, Kinchington PR, Schmid DS, Balloux F, Nichols RA, Breuer J.

Mol Biol Evol. 2014 Feb;31(2):397-409. doi: 10.1093/molbev/mst210. Epub 2013 Oct 25.

PMID:
24162921
[PubMed - in process]
Free PMC Article
3.

Chromosomal copy number variation, selection and uneven rates of recombination reveal cryptic genome diversity linked to pathogenicity.

Farrer RA, Henk DA, Garner TW, Balloux F, Woodhams DC, Fisher MC.

PLoS Genet. 2013;9(8):e1003703. doi: 10.1371/journal.pgen.1003703. Epub 2013 Aug 15.

PMID:
23966879
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Regular treatments of praziquantel do not impact on the genetic make-up of Schistosoma mansoni in Northern Senegal.

Huyse T, Van den Broeck F, Jombart T, Webster BL, Diaw O, Volckaert FA, Balloux F, Rollinson D, Polman K.

Infect Genet Evol. 2013 Aug;18:100-5. doi: 10.1016/j.meegid.2013.05.007. Epub 2013 May 15.

PMID:
23684792
[PubMed - indexed for MEDLINE]
5.

A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic.

Holden MT, Hsu LY, Kurt K, Weinert LA, Mather AE, Harris SR, Strommenger B, Layer F, Witte W, de Lencastre H, Skov R, Westh H, Zemlicková H, Coombs G, Kearns AM, Hill RL, Edgeworth J, Gould I, Gant V, Cooke J, Edwards GF, McAdam PR, Templeton KE, McCann A, Zhou Z, Castillo-Ramírez S, Feil EJ, Hudson LO, Enright MC, Balloux F, Aanensen DM, Spratt BG, Fitzgerald JR, Parkhill J, Achtman M, Bentley SD, Nübel U.

Genome Res. 2013 Apr;23(4):653-64. doi: 10.1101/gr.147710.112. Epub 2013 Jan 8.

PMID:
23299977
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis.

Cui Y, Yu C, Yan Y, Li D, Li Y, Jombart T, Weinert LA, Wang Z, Guo Z, Xu L, Zhang Y, Zheng H, Qin N, Xiao X, Wu M, Wang X, Zhou D, Qi Z, Du Z, Wu H, Yang X, Cao H, Wang H, Wang J, Yao S, Rakin A, Li Y, Falush D, Balloux F, Achtman M, Song Y, Wang J, Yang R.

Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):577-82. doi: 10.1073/pnas.1205750110. Epub 2012 Dec 27.

PMID:
23271803
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Late Pleistocene climate change and the global expansion of anatomically modern humans.

Eriksson A, Betti L, Friend AD, Lycett SJ, Singarayer JS, von Cramon-Taubadel N, Valdes PJ, Balloux F, Manica A.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16089-94. doi: 10.1073/pnas.1209494109. Epub 2012 Sep 17.

PMID:
22988099
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Diverse approaches to analysing the history of human and pathogen evolution: how to tell the story of the past 70 000 years.

Altmann DM, Balloux F, Boyton RJ.

Philos Trans R Soc Lond B Biol Sci. 2012 Mar 19;367(1590):765-9. doi: 10.1098/rstb.2011.0318.

PMID:
22312043
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Substitution rates at neutral genes depend on population size under fluctuating demography and overlapping generations.

Balloux F, Lehmann L.

Evolution. 2012 Feb;66(2):605-11. doi: 10.1111/j.1558-5646.2011.01458.x. Epub 2011 Oct 3.

PMID:
22276552
[PubMed - indexed for MEDLINE]
10.

Multiple independent introductions of Plasmodium falciparum in South America.

Yalcindag E, Elguero E, Arnathau C, Durand P, Akiana J, Anderson TJ, Aubouy A, Balloux F, Besnard P, Bogreau H, Carnevale P, D'Alessandro U, Fontenille D, Gamboa D, Jombart T, Le Mire J, Leroy E, Maestre A, Mayxay M, Ménard D, Musset L, Newton PN, Nkoghé D, Noya O, Ollomo B, Rogier C, Veron V, Wide A, Zakeri S, Carme B, Legrand E, Chevillon C, Ayala FJ, Renaud F, Prugnolle F.

Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):511-6. doi: 10.1073/pnas.1119058109. Epub 2011 Dec 27.

PMID:
22203975
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage.

Farrer RA, Weinert LA, Bielby J, Garner TW, Balloux F, Clare F, Bosch J, Cunningham AA, Weldon C, du Preez LH, Anderson L, Pond SL, Shahar-Golan R, Henk DA, Fisher MC.

Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):18732-6. doi: 10.1073/pnas.1111915108. Epub 2011 Nov 7.

PMID:
22065772
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Signatures of historical demography and pathogen richness on MHC class I genes.

Qutob N, Balloux F, Raj T, Liu H, Marion de Procé S, Trowsdale J, Manica A.

Immunogenetics. 2012 Mar;64(3):165-75. doi: 10.1007/s00251-011-0576-y. Epub 2011 Sep 23.

PMID:
21947542
[PubMed - indexed for MEDLINE]
13.

An Aboriginal Australian genome reveals separate human dispersals into Asia.

Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgreen S, Metspalu M, Jombart T, Kivisild T, Zhai W, Eriksson A, Manica A, Orlando L, De La Vega FM, Tridico S, Metspalu E, Nielsen K, Ávila-Arcos MC, Moreno-Mayar JV, Muller C, Dortch J, Gilbert MT, Lund O, Wesolowska A, Karmin M, Weinert LA, Wang B, Li J, Tai S, Xiao F, Hanihara T, van Driem G, Jha AR, Ricaut FX, de Knijff P, Migliano AB, Gallego Romero I, Kristiansen K, Lambert DM, Brunak S, Forster P, Brinkmann B, Nehlich O, Bunce M, Richards M, Gupta R, Bustamante CD, Krogh A, Foley RA, Lahr MM, Balloux F, Sicheritz-Pontén T, Villems R, Nielsen R, Wang J, Willerslev E.

Science. 2011 Oct 7;334(6052):94-8. doi: 10.1126/science.1211177. Epub 2011 Sep 22.

PMID:
21940856
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Inclusive fitness theory and eusociality.

Abbot P, Abe J, Alcock J, Alizon S, Alpedrinha JA, Andersson M, Andre JB, van Baalen M, Balloux F, Balshine S, Barton N, Beukeboom LW, Biernaskie JM, Bilde T, Borgia G, Breed M, Brown S, Bshary R, Buckling A, Burley NT, Burton-Chellew MN, Cant MA, Chapuisat M, Charnov EL, Clutton-Brock T, Cockburn A, Cole BJ, Colegrave N, Cosmides L, Couzin ID, Coyne JA, Creel S, Crespi B, Curry RL, Dall SR, Day T, Dickinson JL, Dugatkin LA, El Mouden C, Emlen ST, Evans J, Ferriere R, Field J, Foitzik S, Foster K, Foster WA, Fox CW, Gadau J, Gandon S, Gardner A, Gardner MG, Getty T, Goodisman MA, Grafen A, Grosberg R, Grozinger CM, Gouyon PH, Gwynne D, Harvey PH, Hatchwell BJ, Heinze J, Helantera H, Helms KR, Hill K, Jiricny N, Johnstone RA, Kacelnik A, Kiers ET, Kokko H, Komdeur J, Korb J, Kronauer D, Kümmerli R, Lehmann L, Linksvayer TA, Lion S, Lyon B, Marshall JA, McElreath R, Michalakis Y, Michod RE, Mock D, Monnin T, Montgomerie R, Moore AJ, Mueller UG, Noë R, Okasha S, Pamilo P, Parker GA, Pedersen JS, Pen I, Pfennig D, Queller DC, Rankin DJ, Reece SE, Reeve HK, Reuter M, Roberts G, Robson SK, Roze D, Rousset F, Rueppell O, Sachs JL, Santorelli L, Schmid-Hempel P, Schwarz MP, Scott-Phillips T, Shellmann-Sherman J, Sherman PW, Shuker DM, Smith J, Spagna JC, Strassmann B, Suarez AV, Sundström L, Taborsky M, Taylor P, Thompson G, Tooby J, Tsutsui ND, Tsuji K, Turillazzi S, Ubeda F, Vargo EL, Voelkl B, Wenseleers T, West SA, West-Eberhard MJ, Westneat DF, Wiernasz DC, Wild G, Wrangham R, Young AJ, Zeh DW, Zeh JA, Zink A.

Nature. 2011 Mar 24;471(7339):E1-4; author reply E9-10. doi: 10.1038/nature09831.

PMID:
21430721
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity.

Morelli G, Song Y, Mazzoni CJ, Eppinger M, Roumagnac P, Wagner DM, Feldkamp M, Kusecek B, Vogler AJ, Li Y, Cui Y, Thomson NR, Jombart T, Leblois R, Lichtner P, Rahalison L, Petersen JM, Balloux F, Keim P, Wirth T, Ravel J, Yang R, Carniel E, Achtman M.

Nat Genet. 2010 Dec;42(12):1140-3. doi: 10.1038/ng.705. Epub 2010 Oct 31.

PMID:
21037571
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations.

Jombart T, Devillard S, Balloux F.

BMC Genet. 2010 Oct 15;11:94. doi: 10.1186/1471-2156-11-94.

PMID:
20950446
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Plasmodium falciparum accompanied the human expansion out of Africa.

Tanabe K, Mita T, Jombart T, Eriksson A, Horibe S, Palacpac N, Ranford-Cartwright L, Sawai H, Sakihama N, Ohmae H, Nakamura M, Ferreira MU, Escalante AA, Prugnolle F, Björkman A, Färnert A, Kaneko A, Horii T, Manica A, Kishino H, Balloux F.

Curr Biol. 2010 Jul 27;20(14):1283-9. doi: 10.1016/j.cub.2010.05.053. Epub 2010 Jun 17.

PMID:
20656209
[PubMed - indexed for MEDLINE]
Free Article
18.

Reconstructing disease outbreaks from genetic data: a graph approach.

Jombart T, Eggo RM, Dodd PJ, Balloux F.

Heredity (Edinb). 2011 Feb;106(2):383-90. doi: 10.1038/hdy.2010.78. Epub 2010 Jun 16.

PMID:
20551981
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

adephylo: new tools for investigating the phylogenetic signal in biological traits.

Jombart T, Balloux F, Dray S.

Bioinformatics. 2010 Aug 1;26(15):1907-9. doi: 10.1093/bioinformatics/btq292. Epub 2010 Jun 4.

PMID:
20525823
[PubMed - indexed for MEDLINE]
Free Article
20.

A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureus.

Nübel U, Dordel J, Kurt K, Strommenger B, Westh H, Shukla SK, Zemlicková H, Leblois R, Wirth T, Jombart T, Balloux F, Witte W.

PLoS Pathog. 2010 Apr 8;6(4):e1000855. doi: 10.1371/journal.ppat.1000855.

PMID:
20386717
[PubMed - indexed for MEDLINE]
Free PMC Article

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