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Results: 17

1.

Brain transcriptome sequencing and assembly of three songbird model systems for the study of social behavior.

Balakrishnan CN, Mukai M, Gonser RA, Wingfield JC, London SE, Tuttle EM, Clayton DF.

PeerJ. 2014 May 22;2:e396. doi: 10.7717/peerj.396. eCollection 2014.

PMID:
24883256
[PubMed]
Free PMC Article
2.

Brain transcriptome of the violet-eared waxbill Uraeginthus granatina and recent evolution in the songbird genome.

Balakrishnan CN, Chapus C, Brewer MS, Clayton DF.

Open Biol. 2013 Sep 4;3(9):130063. doi: 10.1098/rsob.130063.

PMID:
24004662
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

RNA-seq transcriptome analysis of male and female zebra finch cell lines.

Balakrishnan CN, Lin YC, London SE, Clayton DF.

Genomics. 2012 Dec;100(6):363-9. doi: 10.1016/j.ygeno.2012.08.002. Epub 2012 Aug 21.

PMID:
22922019
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Karyotypic polymorphism of the zebra finch Z chromosome.

Itoh Y, Kampf K, Balakrishnan CN, Arnold AP.

Chromosoma. 2011 Jun;120(3):255-64. doi: 10.1007/s00412-010-0308-3. Epub 2011 Jan 11.

PMID:
21369954
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Reptiles and mammals have differentially retained long conserved noncoding sequences from the amniote ancestor.

Janes DE, Chapus C, Gondo Y, Clayton DF, Sinha S, Blatti CA, Organ CL, Fujita MK, Balakrishnan CN, Edwards SV.

Genome Biol Evol. 2011;3:102-13. doi: 10.1093/gbe/evq087. Epub 2010 Dec 23.

PMID:
21183607
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Molecular evolution of genes in avian genomes.

Nam K, Mugal C, Nabholz B, Schielzeth H, Wolf JB, Backström N, Künstner A, Balakrishnan CN, Heger A, Ponting CP, Clayton DF, Ellegren H.

Genome Biol. 2010;11(6):R68. doi: 10.1186/gb-2010-11-6-r68. Epub 2010 Jun 23.

PMID:
20573239
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The genome of a songbird.

Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Lin YC, George J, Sweedler J, Southey B, Gunaratne P, Watson M, Nam K, Backström N, Smeds L, Nabholz B, Itoh Y, Whitney O, Pfenning AR, Howard J, Völker M, Skinner BM, Griffin DK, Ye L, McLaren WM, Flicek P, Quesada V, Velasco G, Lopez-Otin C, Puente XS, Olender T, Lancet D, Smit AF, Hubley R, Konkel MK, Walker JA, Batzer MA, Gu W, Pollock DD, Chen L, Cheng Z, Eichler EE, Stapley J, Slate J, Ekblom R, Birkhead T, Burke T, Burt D, Scharff C, Adam I, Richard H, Sultan M, Soldatov A, Lehrach H, Edwards SV, Yang SP, Li X, Graves T, Fulton L, Nelson J, Chinwalla A, Hou S, Mardis ER, Wilson RK.

Nature. 2010 Apr 1;464(7289):757-62. doi: 10.1038/nature08819.

PMID:
20360741
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Gene duplication and fragmentation in the zebra finch major histocompatibility complex.

Balakrishnan CN, Ekblom R, Völker M, Westerdahl H, Godinez R, Kotkiewicz H, Burt DW, Graves T, Griffin DK, Warren WC, Edwards SV.

BMC Biol. 2010 Apr 1;8:29. doi: 10.1186/1741-7007-8-29.

PMID:
20359332
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Digital gene expression analysis of the zebra finch genome.

Ekblom R, Balakrishnan CN, Burke T, Slate J.

BMC Genomics. 2010 Apr 1;11:219. doi: 10.1186/1471-2164-11-219.

PMID:
20359325
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species.

Künstner A, Wolf JB, Backström N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H.

Mol Ecol. 2010 Mar;19 Suppl 1:266-76. doi: 10.1111/j.1365-294X.2009.04487.x. Erratum in: Mol Ecol. 2011 Jul;20(13):2871.

PMID:
20331785
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Integrating genomes, brain and behavior in the study of songbirds.

Clayton DF, Balakrishnan CN, London SE.

Curr Biol. 2009 Sep 29;19(18):R865-73. doi: 10.1016/j.cub.2009.07.006. Review.

PMID:
19788884
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Nucleotide variation, linkage disequilibrium and founder-facilitated speciation in wild populations of the zebra finch (Taeniopygia guttata).

Balakrishnan CN, Edwards SV.

Genetics. 2009 Feb;181(2):645-60. doi: 10.1534/genetics.108.094250. Epub 2008 Dec 1.

PMID:
19047416
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Incomplete reproductive isolation following host shift in brood parasitic indigobirds.

Balakrishnan CN, Sefc KM, Sorenson MD.

Proc Biol Sci. 2009 Jan 22;276(1655):219-28. doi: 10.1098/rspb.2008.0733.

PMID:
18812294
[PubMed - indexed for MEDLINE]
Free PMC Article
14.
15.

Speciation in birds: genes, geography, and sexual selection.

Edwards SV, Kingan SB, Calkins JD, Balakrishnan CN, Jennings WB, Swanson WJ, Sorenson MD.

Proc Natl Acad Sci U S A. 2005 May 3;102 Suppl 1:6550-7. Epub 2005 Apr 25. Review.

PMID:
15851678
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Clade-limited colonization in brood parasitic finches (Vidua spp.).

Sorenson MD, Balakrishnan CN, Payne RB.

Syst Biol. 2004 Feb;53(1):140-53.

PMID:
14965909
[PubMed - indexed for MEDLINE]
17.

Phylogeography and conservation genetics of Eld's deer (Cervus eldi).

Balakrishnan CN, Monfort SL, Gaur A, Singh L, Sorenson MD.

Mol Ecol. 2003 Jan;12(1):1-10.

PMID:
12492873
[PubMed - indexed for MEDLINE]

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