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Results: 1 to 20 of 27

1.

Molecular modeling of protein-protein interaction to decipher the structural mechanism of nonhost resistance in rice.

Bahadur RP, Basak J.

J Biomol Struct Dyn. 2014 Apr;32(4):669-81. doi: 10.1080/07391102.2013.787370. Epub 2013 May 10.

PMID:
23659345
[PubMed - in process]
2.

Protein-DNA docking with a coarse-grained force field.

Setny P, Bahadur RP, Zacharias M.

BMC Bioinformatics. 2012 Sep 11;13:228. doi: 10.1186/1471-2105-13-228.

PMID:
22966980
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The DNA-binding activity of an AP2 protein is involved in transcriptional regulation of a stress-responsive gene, SiWD40, in foxtail millet.

Mishra AK, Puranik S, Bahadur RP, Prasad M.

Genomics. 2012 Oct;100(4):252-63. doi: 10.1016/j.ygeno.2012.06.012. Epub 2012 Jul 4.

PMID:
22771384
[PubMed - indexed for MEDLINE]
Free Article
4.

PRince: a web server for structural and physicochemical analysis of protein-RNA interface.

Barik A, Mishra A, Bahadur RP.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W440-4. doi: 10.1093/nar/gks535. Epub 2012 Jun 11.

PMID:
22689640
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A protein-RNA docking benchmark (I): nonredundant cases.

Barik A, C N, P M, Bahadur RP.

Proteins. 2012 Jul;80(7):1866-71. doi: 10.1002/prot.24083. Epub 2012 May 10.

PMID:
22488669
[PubMed - indexed for MEDLINE]
6.

Association of an SNP in a novel DREB2-like gene SiDREB2 with stress tolerance in foxtail millet [Setaria italica (L.)].

Lata C, Bhutty S, Bahadur RP, Majee M, Prasad M.

J Exp Bot. 2011 Jun;62(10):3387-401. doi: 10.1093/jxb/err016. Epub 2011 Mar 17.

PMID:
21414959
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Molecular cloning and characterization of a membrane associated NAC family gene, SiNAC from foxtail millet [Setaria italica (L.) P. Beauv].

Puranik S, Bahadur RP, Srivastava PS, Prasad M.

Mol Biotechnol. 2011 Oct;49(2):138-50. doi: 10.1007/s12033-011-9385-7.

PMID:
21312005
[PubMed - indexed for MEDLINE]
8.

Discriminating the native structure from decoys using scoring functions based on the residue packing in globular proteins.

Bahadur RP, Chakrabarti P.

BMC Struct Biol. 2009 Dec 28;9:76. doi: 10.1186/1472-6807-9-76.

PMID:
20038291
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Binding of the bacteriophage P22 N-peptide to the boxB RNA motif studied by molecular dynamics simulations.

Bahadur RP, Kannan S, Zacharias M.

Biophys J. 2009 Dec 16;97(12):3139-49. doi: 10.1016/j.bpj.2009.09.035.

PMID:
20006951
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Accessibility and partner number of protein residues, their relationship and a webserver, ContPlot for their display.

Pal A, Bahadur RP, Ray PS, Chakrabarti P.

BMC Bioinformatics. 2009 Apr 8;10:103. doi: 10.1186/1471-2105-10-103.

PMID:
19356223
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Protein-protein interaction and quaternary structure.

Janin J, Bahadur RP, Chakrabarti P.

Q Rev Biophys. 2008 May;41(2):133-80. doi: 10.1017/S0033583508004708. Review.

PMID:
18812015
[PubMed - indexed for MEDLINE]
12.

Atypical asymmetric lattice corneal dystrophy associated with a novel homozygous mutation (Val624Met) in the TGFBI gene.

Afshari NA, Bahadur RP, Eifrig DE Jr, Thogersen IB, Enghild JJ, Klintworth GK.

Mol Vis. 2008 Mar 12;14:495-9.

PMID:
18385782
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Dissecting protein-RNA recognition sites.

Bahadur RP, Zacharias M, Janin J.

Nucleic Acids Res. 2008 May;36(8):2705-16. doi: 10.1093/nar/gkn102. Epub 2008 Mar 19.

PMID:
18353859
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Traumatic epithelial downgrowth after radial keratotomy.

Nemi A, Bahadur RP, Randleman JB.

J Cataract Refract Surg. 2008 Feb;34(2):327-9. doi: 10.1016/j.jcrs.2007.09.018.

PMID:
18242462
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological protein-protein interactions.

Bernauer J, Bahadur RP, Rodier F, Janin J, Poupon A.

Bioinformatics. 2008 Mar 1;24(5):652-8. doi: 10.1093/bioinformatics/btn022. Epub 2008 Jan 19.

PMID:
18204058
[PubMed - indexed for MEDLINE]
Free Article
16.

The interface of protein-protein complexes: analysis of contacts and prediction of interactions.

Bahadur RP, Zacharias M.

Cell Mol Life Sci. 2008 Apr;65(7-8):1059-72. Review.

PMID:
18080088
[PubMed - indexed for MEDLINE]
17.

Residue conservation in viral capsid assembly.

Bahadur RP, Janin J.

Proteins. 2008 Apr;71(1):407-14.

PMID:
17957774
[PubMed - indexed for MEDLINE]
18.

A dissection of the protein-protein interfaces in icosahedral virus capsids.

Bahadur RP, Rodier F, Janin J.

J Mol Biol. 2007 Mar 23;367(2):574-90. Epub 2006 Dec 24.

PMID:
17270209
[PubMed - indexed for MEDLINE]
19.

Macromolecular recognition in the Protein Data Bank.

Janin J, Rodier F, Chakrabarti P, Bahadur RP.

Acta Crystallogr D Biol Crystallogr. 2007 Jan;63(Pt 1):1-8. Epub 2006 Dec 13.

PMID:
17164520
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Revisiting the Voronoi description of protein-protein interfaces.

Cazals F, Proust F, Bahadur RP, Janin J.

Protein Sci. 2006 Sep;15(9):2082-92.

PMID:
16943442
[PubMed - indexed for MEDLINE]
Free PMC Article

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