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Items: 1 to 20 of 33

1.

Layers: A molecular surface peeling algorithm and its applications to analyze protein structures.

Karampudi NB, Bahadur RP.

Sci Rep. 2015 Nov 10;5:16141. doi: 10.1038/srep16141.

2.

Probing binding hot spots at protein-RNA recognition sites.

Barik A, Nithin C, Karampudi NB, Mukherjee S, Bahadur RP.

Nucleic Acids Res. 2016 Jan 29;44(2):e9. doi: 10.1093/nar/gkv876. Epub 2015 Sep 13.

3.

Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures.

Nithin C, Patwa N, Thomas A, Bahadur RP, Basak J.

BMC Plant Biol. 2015 Jun 12;15:140. doi: 10.1186/s12870-015-0516-3.

4.

A repressor activator protein1 homologue from an oleaginous strain of Candida tropicalis increases storage lipid production in Saccharomyces cerevisiae.

Chattopadhyay A, Dey P, Barik A, Bahadur RP, Maiti MK.

FEMS Yeast Res. 2015 Jun;15(4):fov013. doi: 10.1093/femsyr/fov013. Epub 2015 Mar 23. Erratum in: FEMS Yeast Res. 2015 Sep;15(6). pii: fov058. doi: 10.1093/femsyr/fov058.

PMID:
25805842
5.

Molecular architecture of protein-RNA recognition sites.

Barik A, C N, Pilla SP, Bahadur RP.

J Biomol Struct Dyn. 2015;33(12):2738-51. doi: 10.1080/07391102.2015.1004652. Epub 2015 Feb 11.

PMID:
25562181
6.

Hydration of protein-RNA recognition sites.

Barik A, Bahadur RP.

Nucleic Acids Res. 2014 Sep;42(15):10148-60. doi: 10.1093/nar/gku679. Epub 2014 Aug 11.

7.

Molecular modeling of protein-protein interaction to decipher the structural mechanism of nonhost resistance in rice.

Bahadur RP, Basak J.

J Biomol Struct Dyn. 2014 Apr;32(4):669-81. doi: 10.1080/07391102.2013.787370. Epub 2013 May 10.

PMID:
23659345
8.

Protein-DNA docking with a coarse-grained force field.

Setny P, Bahadur RP, Zacharias M.

BMC Bioinformatics. 2012 Sep 11;13:228. doi: 10.1186/1471-2105-13-228.

9.

The DNA-binding activity of an AP2 protein is involved in transcriptional regulation of a stress-responsive gene, SiWD40, in foxtail millet.

Mishra AK, Puranik S, Bahadur RP, Prasad M.

Genomics. 2012 Oct;100(4):252-63. doi: 10.1016/j.ygeno.2012.06.012. Epub 2012 Jul 4.

10.

PRince: a web server for structural and physicochemical analysis of protein-RNA interface.

Barik A, Mishra A, Bahadur RP.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W440-4. doi: 10.1093/nar/gks535. Epub 2012 Jun 11.

11.

A protein-RNA docking benchmark (I): nonredundant cases.

Barik A, C N, P M, Bahadur RP.

Proteins. 2012 Jul;80(7):1866-71. doi: 10.1002/prot.24083. Epub 2012 May 10.

PMID:
22488669
12.

Association of an SNP in a novel DREB2-like gene SiDREB2 with stress tolerance in foxtail millet [Setaria italica (L.)].

Lata C, Bhutty S, Bahadur RP, Majee M, Prasad M.

J Exp Bot. 2011 Jun;62(10):3387-401. doi: 10.1093/jxb/err016. Epub 2011 Mar 17.

13.

Molecular cloning and characterization of a membrane associated NAC family gene, SiNAC from foxtail millet [Setaria italica (L.) P. Beauv].

Puranik S, Bahadur RP, Srivastava PS, Prasad M.

Mol Biotechnol. 2011 Oct;49(2):138-50. doi: 10.1007/s12033-011-9385-7.

PMID:
21312005
14.

Discriminating the native structure from decoys using scoring functions based on the residue packing in globular proteins.

Bahadur RP, Chakrabarti P.

BMC Struct Biol. 2009 Dec 28;9:76. doi: 10.1186/1472-6807-9-76.

15.

Binding of the bacteriophage P22 N-peptide to the boxB RNA motif studied by molecular dynamics simulations.

Bahadur RP, Kannan S, Zacharias M.

Biophys J. 2009 Dec 16;97(12):3139-49. doi: 10.1016/j.bpj.2009.09.035.

16.

Accessibility and partner number of protein residues, their relationship and a webserver, ContPlot for their display.

Pal A, Bahadur RP, Ray PS, Chakrabarti P.

BMC Bioinformatics. 2009 Apr 8;10:103. doi: 10.1186/1471-2105-10-103.

17.

Protein-protein interaction and quaternary structure.

Janin J, Bahadur RP, Chakrabarti P.

Q Rev Biophys. 2008 May;41(2):133-80. doi: 10.1017/S0033583508004708. Review.

PMID:
18812015
18.

Atypical asymmetric lattice corneal dystrophy associated with a novel homozygous mutation (Val624Met) in the TGFBI gene.

Afshari NA, Bahadur RP, Eifrig DE Jr, Thogersen IB, Enghild JJ, Klintworth GK.

Mol Vis. 2008 Mar 12;14:495-9.

19.

Dissecting protein-RNA recognition sites.

Bahadur RP, Zacharias M, Janin J.

Nucleic Acids Res. 2008 May;36(8):2705-16. doi: 10.1093/nar/gkn102. Epub 2008 Mar 19.

20.

Traumatic epithelial downgrowth after radial keratotomy.

Nemi A, Bahadur RP, Randleman JB.

J Cataract Refract Surg. 2008 Feb;34(2):327-9. doi: 10.1016/j.jcrs.2007.09.018.

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