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Results: 1 to 20 of 81

1.

πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios.

Bielejec F, Lemey P, Carvalho LM, Baele G, Rambaut A, Suchard MA.

BMC Bioinformatics. 2014 May 7;15:133. doi: 10.1186/1471-2105-15-133.

PMID:
24885610
[PubMed - in process]
Free PMC Article
2.

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary.

Vanneste K, Baele G, Maere S, Van de Peer Y.

Genome Res. 2014 May 16. pii: gr.168997.113. [Epub ahead of print]

PMID:
24835588
[PubMed - as supplied by publisher]
Free Article
3.

Air travel is associated with intracontinental spread of dengue virus serotypes 1-3 in Brazil.

Nunes MR, Palacios G, Faria NR, Sousa EC Jr, Pantoja JA, Rodrigues SG, Carvalho VL, Medeiros DB, Savji N, Baele G, Suchard MA, Lemey P, Vasconcelos PF, Lipkin WI.

PLoS Negl Trop Dis. 2014 Apr 17;8(4):e2769. doi: 10.1371/journal.pntd.0002769. eCollection 2014 Apr.

PMID:
24743730
[PubMed - in process]
Free PMC Article
4.

The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates.

Vrancken B, Rambaut A, Suchard MA, Drummond A, Baele G, Derdelinckx I, Van Wijngaerden E, Vandamme AM, Van Laethem K, Lemey P.

PLoS Comput Biol. 2014 Apr 3;10(4):e1003505. doi: 10.1371/journal.pcbi.1003505. eCollection 2014 Apr.

PMID:
24699231
[PubMed - in process]
Free PMC Article
5.

Inferring heterogeneous evolutionary processes through time: from sequence substitution to phylogeography.

Bielejec F, Lemey P, Baele G, Rambaut A, Suchard MA.

Syst Biol. 2014 Jul;63(4):493-504. doi: 10.1093/sysbio/syu015. Epub 2014 Mar 12.

PMID:
24627184
[PubMed - in process]
Free PMC Article
6.

Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2.

Lemey P, Rambaut A, Bedford T, Faria N, Bielejec F, Baele G, Russell CA, Smith DJ, Pybus OG, Brockmann D, Suchard MA.

PLoS Pathog. 2014 Feb 20;10(2):e1003932. doi: 10.1371/journal.ppat.1003932. eCollection 2014 Feb.

PMID:
24586153
[PubMed - in process]
Free PMC Article
7.

Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency.

Baele G, Lemey P.

Bioinformatics. 2013 Aug 15;29(16):1970-9. doi: 10.1093/bioinformatics/btt340. Epub 2013 Jun 12.

PMID:
23766415
[PubMed - indexed for MEDLINE]
8.

Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution.

Baele G, Lemey P, Vansteelandt S.

BMC Bioinformatics. 2013 Mar 6;14:85. doi: 10.1186/1471-2105-14-85.

PMID:
23497171
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics.

Baele G, Li WL, Drummond AJ, Suchard MA, Lemey P.

Mol Biol Evol. 2013 Feb;30(2):239-43. doi: 10.1093/molbev/mss243. Epub 2012 Oct 22.

PMID:
23090976
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty.

Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV.

Mol Biol Evol. 2012 Sep;29(9):2157-67. doi: 10.1093/molbev/mss084. Epub 2012 Mar 7.

PMID:
22403239
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The genome of Tetranychus urticae reveals herbivorous pest adaptations.

Grbić M, Van Leeuwen T, Clark RM, Rombauts S, Rouzé P, Grbić V, Osborne EJ, Dermauw W, Ngoc PC, Ortego F, Hernández-Crespo P, Diaz I, Martinez M, Navajas M, Sucena É, Magalhães S, Nagy L, Pace RM, Djuranović S, Smagghe G, Iga M, Christiaens O, Veenstra JA, Ewer J, Villalobos RM, Hutter JL, Hudson SD, Velez M, Yi SV, Zeng J, Pires-daSilva A, Roch F, Cazaux M, Navarro M, Zhurov V, Acevedo G, Bjelica A, Fawcett JA, Bonnet E, Martens C, Baele G, Wissler L, Sanchez-Rodriguez A, Tirry L, Blais C, Demeestere K, Henz SR, Gregory TR, Mathieu J, Verdon L, Farinelli L, Schmutz J, Lindquist E, Feyereisen R, Van de Peer Y.

Nature. 2011 Nov 23;479(7374):487-92. doi: 10.1038/nature10640.

PMID:
22113690
[PubMed - indexed for MEDLINE]
12.

Context-dependent codon partition models provide significant increases in model fit in atpB and rbcL protein-coding genes.

Baele G, Van de Peer Y, Vansteelandt S.

BMC Evol Biol. 2011 May 27;11:145. doi: 10.1186/1471-2148-11-145.

PMID:
21619569
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Modelling the ancestral sequence distribution and model frequencies in context-dependent models for primate non-coding sequences.

Baele G, Van de Peer Y, Vansteelandt S.

BMC Evol Biol. 2010 Aug 10;10:244. doi: 10.1186/1471-2148-10-244.

PMID:
20698960
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Using non-reversible context-dependent evolutionary models to study substitution patterns in primate non-coding sequences.

Baele G, Van de Peer Y, Vansteelandt S.

J Mol Evol. 2010 Jul;71(1):34-50. doi: 10.1007/s00239-010-9362-y. Epub 2010 Jul 11.

PMID:
20623275
[PubMed - indexed for MEDLINE]
15.

A screening methodology based on Random Forests to improve the detection of gene-gene interactions.

De Lobel L, Geurts P, Baele G, Castro-Giner F, Kogevinas M, Van Steen K.

Eur J Hum Genet. 2010 Oct;18(10):1127-32. doi: 10.1038/ejhg.2010.48. Epub 2010 May 12.

PMID:
20461113
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Interpretation of urinary concentrations of pseudoephedrine and its metabolite cathine in relation to doping control.

Deventer K, Van Eenoo P, Baele G, Pozo OJ, Van Thuyne W, Delbeke FT.

Drug Test Anal. 2009 May;1(5):209-13. doi: 10.1002/dta.31.

PMID:
20355197
[PubMed - indexed for MEDLINE]
17.

Efficient context-dependent model building based on clustering posterior distributions for non-coding sequences.

Baele G, Peer YV, Vansteelandt S.

BMC Evol Biol. 2009 Apr 30;9:87. doi: 10.1186/1471-2148-9-87.

PMID:
19405957
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Stability of selected chlorinated thiazide diuretics.

Deventer K, Baele G, Van Eenoo P, Pozo OJ, Delbeke FT.

J Pharm Biomed Anal. 2009 Feb 20;49(2):519-24. doi: 10.1016/j.jpba.2008.11.001. Epub 2008 Nov 13.

PMID:
19108977
[PubMed - indexed for MEDLINE]
19.

A model-based approach to study nearest-neighbor influences reveals complex substitution patterns in non-coding sequences.

Baele G, Van de Peer Y, Vansteelandt S.

Syst Biol. 2008 Oct;57(5):675-92. doi: 10.1080/10635150802422324.

PMID:
18853356
[PubMed - indexed for MEDLINE]
20.

An improved statistical method for detecting heterotachy in nucleotide sequences.

Baele G, Raes J, Van de Peer Y, Vansteelandt S.

Mol Biol Evol. 2006 Jul;23(7):1397-405. Epub 2006 May 3.

PMID:
16672284
[PubMed - indexed for MEDLINE]
Free Article

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