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Results: 1 to 20 of 26

1.

Oct4 is required ~E7.5 for proliferation in the primitive streak.

DeVeale B, Brokhman I, Mohseni P, Babak T, Yoon C, Lin A, Onishi K, Tomilin A, Pevny L, Zandstra PW, Nagy A, van der Kooy D.

PLoS Genet. 2013 Nov;9(11):e1003957. doi: 10.1371/journal.pgen.1003957. Epub 2013 Nov 14.

PMID:
24244203
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Identification of imprinted loci by transcriptome sequencing.

Babak T.

Methods Mol Biol. 2012;925:79-88. doi: 10.1007/978-1-62703-011-3_6.

PMID:
22907492
[PubMed - indexed for MEDLINE]
3.

Global analysis of the evolution and mechanism of echinocandin resistance in Candida glabrata.

Singh-Babak SD, Babak T, Diezmann S, Hill JA, Xie JL, Chen YL, Poutanen SM, Rennie RP, Heitman J, Cowen LE.

PLoS Pathog. 2012;8(5):e1002718. doi: 10.1371/journal.ppat.1002718. Epub 2012 May 17.

PMID:
22615574
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Critical evaluation of imprinted gene expression by RNA-Seq: a new perspective.

DeVeale B, van der Kooy D, Babak T.

PLoS Genet. 2012;8(3):e1002600. doi: 10.1371/journal.pgen.1002600. Epub 2012 Mar 29.

PMID:
22479196
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A quantitative atlas of polyadenylation in five mammals.

Derti A, Garrett-Engele P, Macisaac KD, Stevens RC, Sriram S, Chen R, Rohl CA, Johnson JM, Babak T.

Genome Res. 2012 Jun;22(6):1173-83. doi: 10.1101/gr.132563.111. Epub 2012 Mar 27.

PMID:
22454233
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Systematic detection of polygenic cis-regulatory evolution.

Fraser HB, Babak T, Tsang J, Zhou Y, Zhang B, Mehrabian M, Schadt EE.

PLoS Genet. 2011 Mar;7(3):e1002023. doi: 10.1371/journal.pgen.1002023. Epub 2011 Mar 31.

PMID:
21483757
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

NSR-seq transcriptional profiling enables identification of a gene signature of Plasmodium falciparum parasites infecting children.

Vignali M, Armour CD, Chen J, Morrison R, Castle JC, Biery MC, Bouzek H, Moon W, Babak T, Fried M, Raymond CK, Duffy PE.

J Clin Invest. 2011 Mar;121(3):1119-29. doi: 10.1172/JCI43457. Epub 2011 Feb 7.

PMID:
21317536
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation.

Babak T, Garrett-Engele P, Armour CD, Raymond CK, Keller MP, Chen R, Rohl CA, Johnson JM, Attie AD, Fraser HB, Schadt EE.

BMC Genomics. 2010 Aug 13;11:473. doi: 10.1186/1471-2164-11-473.

PMID:
20707912
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Global survey of escape from X inactivation by RNA-sequencing in mouse.

Yang F, Babak T, Shendure J, Disteche CM.

Genome Res. 2010 May;20(5):614-22. doi: 10.1101/gr.103200.109. Epub 2010 Apr 2.

PMID:
20363980
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300.

Khanna M, Van Bakel H, Tang X, Calarco JA, Babak T, Guo G, Emili A, Greenblatt JF, Hughes TR, Krogan NJ, Blencowe BJ.

RNA. 2009 Dec;15(12):2174-85. doi: 10.1261/rna.1790509. Epub 2009 Sep 29.

PMID:
19789211
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Digital transcriptome profiling using selective hexamer priming for cDNA synthesis.

Armour CD, Castle JC, Chen R, Babak T, Loerch P, Jackson S, Shah JK, Dey J, Rohl CA, Johnson JM, Raymond CK.

Nat Methods. 2009 Sep;6(9):647-9. doi: 10.1038/nmeth.1360. Epub 2009 Aug 9.

PMID:
19668204
[PubMed - indexed for MEDLINE]
12.

Conservation of core gene expression in vertebrate tissues.

Chan ET, Quon GT, Chua G, Babak T, Trochesset M, Zirngibl RA, Aubin J, Ratcliffe MJ, Wilde A, Brudno M, Morris QD, Hughes TR.

J Biol. 2009;8(3):33. doi: 10.1186/jbiol130. Epub 2009 Apr 16.

PMID:
19371447
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Prediction and verification of mouse tRNA gene families.

Coughlin DJ, Babak T, Nihranz C, Hughes TR, Engelke DR.

RNA Biol. 2009 Apr-Jun;6(2):195-202. Epub 2009 May 1.

PMID:
19246989
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Global survey of genomic imprinting by transcriptome sequencing.

Babak T, Deveale B, Armour C, Raymond C, Cleary MA, van der Kooy D, Johnson JM, Lim LP.

Curr Biol. 2008 Nov 25;18(22):1735-41. doi: 10.1016/j.cub.2008.09.044.

PMID:
19026546
[PubMed - indexed for MEDLINE]
Free Article
15.

miRNA and piRNA localization in the male mammalian meiotic nucleus.

Marcon E, Babak T, Chua G, Hughes T, Moens PB.

Chromosome Res. 2008;16(2):243-60. doi: 10.1007/s10577-007-1190-6. Epub 2008 Jan 22.

PMID:
18204908
[PubMed - indexed for MEDLINE]
16.

Using expression profiling data to identify human microRNA targets.

Huang JC, Babak T, Corson TW, Chua G, Khan S, Gallie BL, Hughes TR, Blencowe BJ, Frey BJ, Morris QD.

Nat Methods. 2007 Dec;4(12):1045-9. Epub 2007 Nov 18.

PMID:
18026111
[PubMed - indexed for MEDLINE]
17.

Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function.

Lécuyer E, Yoshida H, Parthasarathy N, Alm C, Babak T, Cerovina T, Hughes TR, Tomancak P, Krause HM.

Cell. 2007 Oct 5;131(1):174-87.

PMID:
17923096
[PubMed - indexed for MEDLINE]
Free Article
18.

Functional coordination of alternative splicing in the mammalian central nervous system.

Fagnani M, Barash Y, Ip JY, Misquitta C, Pan Q, Saltzman AL, Shai O, Lee L, Rozenhek A, Mohammad N, Willaime-Morawek S, Babak T, Zhang W, Hughes TR, van der Kooy D, Frey BJ, Blencowe BJ.

Genome Biol. 2007;8(6):R108.

PMID:
17565696
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Considerations in the identification of functional RNA structural elements in genomic alignments.

Babak T, Blencowe BJ, Hughes TR.

BMC Bioinformatics. 2007 Jan 30;8:33.

PMID:
17263882
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase.

Tadros W, Goldman AL, Babak T, Menzies F, Vardy L, Orr-Weaver T, Hughes TR, Westwood JT, Smibert CA, Lipshitz HD.

Dev Cell. 2007 Jan;12(1):143-55.

PMID:
17199047
[PubMed - indexed for MEDLINE]
Free Article

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