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Results: 1 to 20 of 41

1.

The classical lancefield antigen of group a streptococcus is a virulence determinant with implications for vaccine design.

van Sorge NM, Cole JN, Kuipers K, Henningham A, Aziz RK, Kasirer-Friede A, Lin L, Berends ET, Davies MR, Dougan G, Zhang F, Dahesh S, Shaw L, Gin J, Cunningham M, Merriman JA, Hütter J, Lepenies B, Rooijakkers SH, Malley R, Walker MJ, Shattil SJ, Schlievert PM, Choudhury B, Nizet V.

Cell Host Microbe. 2014 Jun 11;15(6):729-40. doi: 10.1016/j.chom.2014.05.009.

PMID:
24922575
[PubMed - in process]
2.

Pharmacomicrobiomics: the impact of human microbiome variations on systems pharmacology and personalized therapeutics.

ElRakaiby M, Dutilh BE, Rizkallah MR, Boleij A, Cole JN, Aziz RK.

OMICS. 2014 Jul;18(7):402-14. doi: 10.1089/omi.2014.0018. Epub 2014 May 2.

PMID:
24785449
[PubMed - in process]
3.

Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments.

Monk JM, Charusanti P, Aziz RK, Lerman JA, Premyodhin N, Orth JD, Feist AM, Palsson BØ.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20338-43. doi: 10.1073/pnas.1307797110. Epub 2013 Nov 25.

PMID:
24277855
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Applying Shannon's information theory to bacterial and phage genomes and metagenomes.

Akhter S, Bailey BA, Salamon P, Aziz RK, Edwards RA.

Sci Rep. 2013;3:1033. doi: 10.1038/srep01033. Epub 2013 Jan 8.

PMID:
23301154
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Gut Pharmacomicrobiomics: the tip of an iceberg of complex interactions between drugs and gut-associated microbes.

Saad R, Rizkallah MR, Aziz RK.

Gut Pathog. 2012 Nov 30;4(1):16. doi: 10.1186/1757-4749-4-16.

PMID:
23194438
[PubMed]
Free PMC Article
6.

SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models.

Aziz RK, Devoid S, Disz T, Edwards RA, Henry CS, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Stevens RL, Vonstein V, Xia F.

PLoS One. 2012;7(10):e48053. doi: 10.1371/journal.pone.0048053. Epub 2012 Oct 24.

PMID:
23110173
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A conserved UDP-glucose dehydrogenase encoded outside the hasABC operon contributes to capsule biogenesis in group A Streptococcus.

Cole JN, Aziz RK, Kuipers K, Timmer AM, Nizet V, van Sorge NM.

J Bacteriol. 2012 Nov;194(22):6154-61. doi: 10.1128/JB.01317-12. Epub 2012 Sep 7.

PMID:
22961854
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Tracing the evolutionary history of the pandemic group A streptococcal M1T1 clone.

Maamary PG, Ben Zakour NL, Cole JN, Hollands A, Aziz RK, Barnett TC, Cork AJ, Henningham A, Sanderson-Smith M, McArthur JD, Venturini C, Gillen CM, Kirk JK, Johnson DR, Taylor WL, Kaplan EL, Kotb M, Nizet V, Beatson SA, Walker MJ.

FASEB J. 2012 Nov;26(11):4675-84. doi: 10.1096/fj.12-212142. Epub 2012 Aug 9.

PMID:
22878963
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The important role of inflammatory biomarkers pre and post bare-metal and drug-eluting stent implantation.

Khouzam RN, Shaheen M, Aziz RK, Ibebuogu UN.

Can J Cardiol. 2012 Nov-Dec;28(6):700-5. doi: 10.1016/j.cjca.2012.05.012. Epub 2012 Jul 21. Review.

PMID:
22819358
[PubMed - indexed for MEDLINE]
10.

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies.

Akhter S, Aziz RK, Edwards RA.

Nucleic Acids Res. 2012 Sep;40(16):e126. doi: 10.1093/nar/gks406. Epub 2012 May 14.

PMID:
22584627
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Towards an Ecology of Collective Innovation: Human Variome Project (HVP), Rare Disease Consortium for Autosomal Loci (RaDiCAL) and Data-Enabled Life Sciences Alliance (DELSA).

Ozdemir V, Rosenblatt DS, Warnich L, Srivastava S, Tadmouri GO, Aziz RK, Reddy PJ, Manamperi A, Dove ES, Joly Y, Zawati MH, Hızel C, Yazan Y, John L, Vaast E, Ptolemy AS, Faraj SA, Kolker E, Cotton RG.

Curr Pharmacogenomics Person Med. 2011 Dec 1;9(4):243-251. No abstract available.

PMID:
22523528
[PubMed]
Free PMC Article
12.

Nutriproteomics and Proteogenomics: Cultivating Two Novel Hybrid Fields of Personalized Medicine with Added Societal Value.

Ozdemir V, Armengaud J, Dubé L, Aziz RK, Knoppers BM.

Curr Pharmacogenomics Person Med. 2010 Dec 1;8(4):240-244. No abstract available.

PMID:
21399751
[PubMed]
Free PMC Article
13.

Parameters governing invasive disease propensity of non-M1 serotype group A streptococci.

Maamary PG, Sanderson-Smith ML, Aziz RK, Hollands A, Cole JN, McKay FC, McArthur JD, Kirk JK, Cork AJ, Keefe RJ, Kansal RG, Sun H, Taylor WL, Chhatwal GS, Ginsburg D, Nizet V, Kotb M, Walker MJ.

J Innate Immun. 2010;2(6):596-606. doi: 10.1159/000317640. Epub 2010 Sep 2.

PMID:
20814186
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Microevolution of group A streptococci in vivo: capturing regulatory networks engaged in sociomicrobiology, niche adaptation, and hypervirulence.

Aziz RK, Kansal R, Aronow BJ, Taylor WL, Rowe SL, Kubal M, Chhatwal GS, Walker MJ, Kotb M.

PLoS One. 2010 Apr 14;5(4):e9798. doi: 10.1371/journal.pone.0009798.

PMID:
20418946
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Pathogen microevolution in high resolution.

Aziz RK, Nizet V.

Sci Transl Med. 2010 Jan 27;2(16):16ps4. doi: 10.1126/scitranslmed.3000713.

PMID:
20371473
[PubMed - indexed for MEDLINE]
16.

Helicobacter pylori: a poor man's gut pathogen?

Khalifa MM, Sharaf RR, Aziz RK.

Gut Pathog. 2010 Mar 31;2(1):2. doi: 10.1186/1757-4749-2-2.

PMID:
20356368
[PubMed]
Free PMC Article
17.

Transposases are the most abundant, most ubiquitous genes in nature.

Aziz RK, Breitbart M, Edwards RA.

Nucleic Acids Res. 2010 Jul;38(13):4207-17. doi: 10.1093/nar/gkq140. Epub 2010 Mar 9. Review.

PMID:
20215432
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Dissection of the molecular basis for hypervirulence of an in vivo-selected phenotype of the widely disseminated M1T1 strain of group A Streptococcus bacteria.

Kansal RG, Datta V, Aziz RK, Abdeltawab NF, Rowe S, Kotb M.

J Infect Dis. 2010 Mar 15;201(6):855-65. doi: 10.1086/651019. Erratum in: J Infect Dis. 2010 Jun 1;201(11):1778-80.

PMID:
20151844
[PubMed - indexed for MEDLINE]
Free Article
19.

A hundred-year-old insight into the gut microbiome!

Aziz RK.

Gut Pathog. 2009 Dec 7;1(1):21. doi: 10.1186/1757-4749-1-21.

PMID:
19968883
[PubMed]
Free PMC Article
20.

The novel polysaccharide deacetylase homologue Pdi contributes to virulence of the aquatic pathogen Streptococcus iniae.

Milani CJ, Aziz RK, Locke JB, Dahesh S, Nizet V, Buchanan JT.

Microbiology. 2010 Feb;156(Pt 2):543-54. doi: 10.1099/mic.0.028365-0. Epub 2009 Sep 17.

PMID:
19762441
[PubMed - indexed for MEDLINE]
Free PMC Article

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