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Results: 1 to 20 of 46

1.

Contaminated water as a source of Helicobacter pylori infection: A review.

Aziz RK, Khalifa MM, Sharaf RR.

J Adv Res. 2015 Jul;6(4):539-47. doi: 10.1016/j.jare.2013.07.007. Epub 2013 Jul 21. Review.

2.

Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes.

Aziz RK, Dwivedi B, Akhter S, Breitbart M, Edwards RA.

Front Microbiol. 2015 May 8;6:381. doi: 10.3389/fmicb.2015.00381. eCollection 2015.

3.

Mutual exclusivity of hyaluronan and hyaluronidase in invasive group A Streptococcus.

Henningham A, Yamaguchi M, Aziz RK, Kuipers K, Buffalo CZ, Dahesh S, Choudhury B, Van Vleet J, Yamaguchi Y, Seymour LM, Ben Zakour NL, He L, Smith HV, Grimwood K, Beatson SA, Ghosh P, Walker MJ, Nizet V, Cole JN.

J Biol Chem. 2014 Nov 14;289(46):32303-15. doi: 10.1074/jbc.M114.602847. Epub 2014 Sep 29.

4.

A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933.

Latif H, Li HJ, Charusanti P, Palsson BØ, Aziz RK.

Genome Announc. 2014 Aug 14;2(4). pii: e00821-14. doi: 10.1128/genomeA.00821-14.

5.

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes.

Dutilh BE, Cassman N, McNair K, Sanchez SE, Silva GG, Boling L, Barr JJ, Speth DR, Seguritan V, Aziz RK, Felts B, Dinsdale EA, Mokili JL, Edwards RA.

Nat Commun. 2014 Jul 24;5:4498. doi: 10.1038/ncomms5498.

6.

The classical lancefield antigen of group a Streptococcus is a virulence determinant with implications for vaccine design.

van Sorge NM, Cole JN, Kuipers K, Henningham A, Aziz RK, Kasirer-Friede A, Lin L, Berends ET, Davies MR, Dougan G, Zhang F, Dahesh S, Shaw L, Gin J, Cunningham M, Merriman JA, Hütter J, Lepenies B, Rooijakkers SH, Malley R, Walker MJ, Shattil SJ, Schlievert PM, Choudhury B, Nizet V.

Cell Host Microbe. 2014 Jun 11;15(6):729-40. doi: 10.1016/j.chom.2014.05.009.

7.

Pharmacomicrobiomics: the impact of human microbiome variations on systems pharmacology and personalized therapeutics.

ElRakaiby M, Dutilh BE, Rizkallah MR, Boleij A, Cole JN, Aziz RK.

OMICS. 2014 Jul;18(7):402-14. doi: 10.1089/omi.2014.0018. Epub 2014 May 2. Review.

8.

Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments.

Monk JM, Charusanti P, Aziz RK, Lerman JA, Premyodhin N, Orth JD, Feist AM, Palsson BØ.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20338-43. doi: 10.1073/pnas.1307797110. Epub 2013 Nov 25.

9.

Applying Shannon's information theory to bacterial and phage genomes and metagenomes.

Akhter S, Bailey BA, Salamon P, Aziz RK, Edwards RA.

Sci Rep. 2013;3:1033. doi: 10.1038/srep01033. Epub 2013 Jan 8.

10.

Gut Pharmacomicrobiomics: the tip of an iceberg of complex interactions between drugs and gut-associated microbes.

Saad R, Rizkallah MR, Aziz RK.

Gut Pathog. 2012 Nov 30;4(1):16. doi: 10.1186/1757-4749-4-16.

11.

SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models.

Aziz RK, Devoid S, Disz T, Edwards RA, Henry CS, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Stevens RL, Vonstein V, Xia F.

PLoS One. 2012;7(10):e48053. doi: 10.1371/journal.pone.0048053. Epub 2012 Oct 24.

12.

A conserved UDP-glucose dehydrogenase encoded outside the hasABC operon contributes to capsule biogenesis in group A Streptococcus.

Cole JN, Aziz RK, Kuipers K, Timmer AM, Nizet V, van Sorge NM.

J Bacteriol. 2012 Nov;194(22):6154-61. doi: 10.1128/JB.01317-12. Epub 2012 Sep 7.

13.

Tracing the evolutionary history of the pandemic group A streptococcal M1T1 clone.

Maamary PG, Ben Zakour NL, Cole JN, Hollands A, Aziz RK, Barnett TC, Cork AJ, Henningham A, Sanderson-Smith M, McArthur JD, Venturini C, Gillen CM, Kirk JK, Johnson DR, Taylor WL, Kaplan EL, Kotb M, Nizet V, Beatson SA, Walker MJ.

FASEB J. 2012 Nov;26(11):4675-84. doi: 10.1096/fj.12-212142. Epub 2012 Aug 9.

14.

The important role of inflammatory biomarkers pre and post bare-metal and drug-eluting stent implantation.

Khouzam RN, Shaheen M, Aziz RK, Ibebuogu UN.

Can J Cardiol. 2012 Nov-Dec;28(6):700-5. doi: 10.1016/j.cjca.2012.05.012. Epub 2012 Jul 21. Review.

PMID:
22819358
15.

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies.

Akhter S, Aziz RK, Edwards RA.

Nucleic Acids Res. 2012 Sep;40(16):e126. doi: 10.1093/nar/gks406. Epub 2012 May 14.

16.

Towards an Ecology of Collective Innovation: Human Variome Project (HVP), Rare Disease Consortium for Autosomal Loci (RaDiCAL) and Data-Enabled Life Sciences Alliance (DELSA).

Ozdemir V, Rosenblatt DS, Warnich L, Srivastava S, Tadmouri GO, Aziz RK, Reddy PJ, Manamperi A, Dove ES, Joly Y, Zawati MH, Hızel C, Yazan Y, John L, Vaast E, Ptolemy AS, Faraj SA, Kolker E, Cotton RG.

Curr Pharmacogenomics Person Med. 2011 Dec 1;9(4):243-251. No abstract available.

17.

Nutriproteomics and Proteogenomics: Cultivating Two Novel Hybrid Fields of Personalized Medicine with Added Societal Value.

Ozdemir V, Armengaud J, Dubé L, Aziz RK, Knoppers BM.

Curr Pharmacogenomics Person Med. 2010 Dec 1;8(4):240-244. No abstract available.

18.

Parameters governing invasive disease propensity of non-M1 serotype group A streptococci.

Maamary PG, Sanderson-Smith ML, Aziz RK, Hollands A, Cole JN, McKay FC, McArthur JD, Kirk JK, Cork AJ, Keefe RJ, Kansal RG, Sun H, Taylor WL, Chhatwal GS, Ginsburg D, Nizet V, Kotb M, Walker MJ.

J Innate Immun. 2010;2(6):596-606. doi: 10.1159/000317640. Epub 2010 Sep 2.

19.

Microevolution of group A streptococci in vivo: capturing regulatory networks engaged in sociomicrobiology, niche adaptation, and hypervirulence.

Aziz RK, Kansal R, Aronow BJ, Taylor WL, Rowe SL, Kubal M, Chhatwal GS, Walker MJ, Kotb M.

PLoS One. 2010 Apr 14;5(4):e9798. doi: 10.1371/journal.pone.0009798.

20.

Pathogen microevolution in high resolution.

Aziz RK, Nizet V.

Sci Transl Med. 2010 Jan 27;2(16):16ps4. doi: 10.1126/scitranslmed.3000713.

PMID:
20371473
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