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Results: 1 to 20 of 22

1.

A statistical approach for inferring the 3D structure of the genome.

Varoquaux N, Ay F, Noble WS, Vert JP.

Bioinformatics. 2014 Jun 15;30(12):i26-33. doi: 10.1093/bioinformatics/btu268.

PMID:
24931992
[PubMed - in process]
Free Article
2.

Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression.

Ay F, Bunnik EM, Varoquaux N, Bol SM, Prudhomme J, Vert JP, Noble WS, Le Roch KG.

Genome Res. 2014 Jun;24(6):974-88. doi: 10.1101/gr.169417.113. Epub 2014 Mar 26.

PMID:
24671853
[PubMed - in process]
3.

Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts.

Ay F, Bailey TL, Noble WS.

Genome Res. 2014 Jun;24(6):999-1011. doi: 10.1101/gr.160374.113. Epub 2014 Feb 5.

PMID:
24501021
[PubMed - in process]
4.

Implications of COMT long-range interactions on the phenotypic variability of 22q11.2 deletion syndrome.

Zeitz MJ, Lerner PP, Ay F, Van Nostrand E, Heidmann JD, Noble WS, Hoffman AR.

Nucleus. 2013 Nov-Dec;4(6):487-93. doi: 10.4161/nucl.27364. Epub 2013 Dec 5.

PMID:
24448439
[PubMed - in process]
5.

Barriers that prevent implementation of research findings in nursing: Education-research hospitals case.

Ay F, Gençtürk N, Turan Miral M.

Int J Nurs Pract. 2013 Nov 21. doi: 10.1111/ijn.12226. [Epub ahead of print]

PMID:
24256131
[PubMed - as supplied by publisher]
6.

Genomic interaction profiles in breast cancer reveal altered chromatin architecture.

Zeitz MJ, Ay F, Heidmann JD, Lerner PL, Noble WS, Steelman BN, Hoffman AR.

PLoS One. 2013 Sep 3;8(9):e73974. doi: 10.1371/journal.pone.0073974. eCollection 2013.

PMID:
24019942
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Metabolic network alignment in large scale by network compression.

Ay F, Dang M, Kahveci T.

BMC Bioinformatics. 2012 Mar 21;13 Suppl 3:S2. doi: 10.1186/1471-2105-13-S3-S2.

PMID:
22536900
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.

Marbach D, Roy S, Ay F, Meyer PE, Candeias R, Kahveci T, Bristow CA, Kellis M.

Genome Res. 2012 Jul;22(7):1334-49. doi: 10.1101/gr.127191.111. Epub 2012 Mar 28.

PMID:
22456606
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Cloning, purification and characterization of a thermostable carboxylesterase from Anoxybacillus sp. PDF1.

Ay F, Karaoglu H, Inan K, Canakci S, Belduz AO.

Protein Expr Purif. 2011 Nov;80(1):74-9. doi: 10.1016/j.pep.2011.06.019. Epub 2011 Jul 14.

PMID:
21782026
[PubMed - indexed for MEDLINE]
10.

SubMAP: aligning metabolic pathways with subnetwork mappings.

Ay F, Kellis M, Kahveci T.

J Comput Biol. 2011 Mar;18(3):219-35. doi: 10.1089/cmb.2010.0280.

PMID:
21385030
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Monolithic integration of erbium-doped amplifiers with silicon-on-insulator waveguides.

Agazzi L, Bradley JD, Dijkstra M, Ay F, Roelkens G, Baets R, Wörhoff K, Pollnau M.

Opt Express. 2010 Dec 20;18(26):27703-11. doi: 10.1364/OE.18.027703.

PMID:
21197045
[PubMed - indexed for MEDLINE]
12.

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, MacAlpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, MacAlpine DM, Stein LD, White KP, Kellis M.

Science. 2010 Dec 24;330(6012):1787-97. doi: 10.1126/science.1198374. Epub 2010 Dec 22.

PMID:
21177974
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Integrated Al2O3:Er3+ ring lasers on silicon with wide wavelength selectivity.

Bradley JD, Stoffer R, Agazzi L, Ay F, Wörhoff K, Pollnau M.

Opt Lett. 2010 Jan 1;35(1):73-5. doi: 10.1364/OL.35.000073.

PMID:
20664677
[PubMed]
14.

Advanced oxidation of amoxicillin by Fenton's reagent treatment.

Ay F, Kargi F.

J Hazard Mater. 2010 Jul 15;179(1-3):622-7. doi: 10.1016/j.jhazmat.2010.03.048. Epub 2010 Mar 17.

PMID:
20363555
[PubMed - indexed for MEDLINE]
15.

[Approaches taken by nurses in treating postoperative pain].

Ay F, Alpar SE.

Agri. 2010 Jan;22(1):21-9. Turkish.

PMID:
20209411
[PubMed - indexed for MEDLINE]
Free Article
16.

Scalable steady state analysis of Boolean biological regulatory networks.

Ay F, Xu F, Kahveci T.

PLoS One. 2009 Dec 1;4(12):e7992. doi: 10.1371/journal.pone.0007992.

PMID:
19956604
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A fast and accurate algorithm for comparative analysis of metabolic pathways.

Ay F, Kahveci T, DE Crécy-Lagard V.

J Bioinform Comput Biol. 2009 Jun;7(3):389-428.

PMID:
19507283
[PubMed - indexed for MEDLINE]
18.

A statistical experiment design approach for advanced oxidation of Direct Red azo-dye by photo-Fenton treatment.

Ay F, Catalkaya EC, Kargi F.

J Hazard Mater. 2009 Feb 15;162(1):230-6. doi: 10.1016/j.jhazmat.2008.05.027. Epub 2008 May 13.

PMID:
18555599
[PubMed - indexed for MEDLINE]
19.

Consistent alignment of metabolic pathways without abstraction.

Ay F, Kahveci T, de Crécy-Lagard V.

Comput Syst Bioinformatics Conf. 2008;7:237-48.

PMID:
19642284
[PubMed - indexed for MEDLINE]
Free Article
20.

Postnatal transitions in myosin heavy chain isoforms of the rabbit superficial masseter and digastric muscle.

Korfage JA, van Wessel T, Langenbach GE, Ay F, van Eijden TM.

J Anat. 2006 Jun;208(6):743-51.

PMID:
16761975
[PubMed - indexed for MEDLINE]
Free PMC Article

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