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Results: 1 to 20 of 137

1.

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera.

Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, de Jong MA, Duplouy A, Smolander OP, Vogel H, McCoy RC, Qian K, Chong WS, Zhang Q, Ahmad F, Haukka JK, Joshi A, Salojärvi J, Wheat CW, Grosse-Wilde E, Hughes D, Katainen R, Pitkänen E, Ylinen J, Waterhouse RM, Turunen M, Vähärautio A, Ojanen SP, Schulman AH, Taipale M, Lawson D, Ukkonen E, Mäkinen V, Goldsmith MR, Holm L, Auvinen P, Frilander MJ, Hanski I.

Nat Commun. 2014 Sep 5;5:4737. doi: 10.1038/ncomms5737.

PMID:
25189940
[PubMed - in process]
2.

Plant development. Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation.

Furuta KM, Yadav SR, Lehesranta S, Belevich I, Miyashima S, Heo JO, Vatén A, Lindgren O, De Rybel B, Van Isterdael G, Somervuo P, Lichtenberger R, Rocha R, Thitamadee S, Tähtiharju S, Auvinen P, Beeckman T, Jokitalo E, Helariutta Y.

Science. 2014 Aug 22;345(6199):933-7. doi: 10.1126/science.1253736. Epub 2014 Jul 31.

PMID:
25081480
[PubMed - in process]
3.

Genomics and Proteomics Provide New Insight into the Commensal and Pathogenic Lifestyles of Bovine- and Human-Associated Staphylococcus epidermidis Strains.

Savijoki K, Iivanainen A, Siljamäki P, Laine PK, Paulin L, Karonen T, Pyörälä S, Kankainen M, Nyman TA, Salomäki T, Koskinen P, Holm L, Simojoki H, Taponen S, Sukura A, Kalkkinen N, Auvinen P, Varmanen P.

J Proteome Res. 2014 Jul 18. [Epub ahead of print]

PMID:
25014494
[PubMed - as supplied by publisher]
4.

Transcriptome analysis reveals signature of adaptation to landscape fragmentation.

Somervuo P, Kvist J, Ikonen S, Auvinen P, Paulin L, Koskinen P, Holm L, Taipale M, Duplouy A, Ruokolainen A, Saarnio S, Sirén J, Kohonen J, Corander J, Frilander MJ, Ahola V, Hanski I.

PLoS One. 2014 Jul 2;9(7):e101467. doi: 10.1371/journal.pone.0101467. eCollection 2014.

PMID:
24988207
[PubMed - in process]
Free PMC Article
5.

Comparative proteome profiling of bovine and human Staphylococcus epidermidis strains for screening specifically expressed virulence and adaptation proteins.

Siljamäki P, Varmanen P, Kankainen M, Pyörälä S, Karonen T, Iivanainen A, Auvinen P, Paulin L, Laine PK, Taponen S, Simojoki H, Sukura A, Nyman TA, Savijoki K.

Proteomics. 2014 Aug;14(16):1890-4. doi: 10.1002/pmic.201300275. Epub 2014 Jul 10.

PMID:
24909406
[PubMed - in process]
6.

Transcriptome dynamics-based operon prediction in prokaryotes.

Fortino V, Smolander OP, Auvinen P, Tagliaferri R, Greco D.

BMC Bioinformatics. 2014 May 16;15:145. doi: 10.1186/1471-2105-15-145.

PMID:
24884724
[PubMed - indexed for MEDLINE]
Free Article
7.

Oxidative stress markers and mitochondrial antioxidant enzyme expression are increased in aggressive Hodgkin lymphomas.

Bur H, Haapasaari KM, Turpeenniemi-Hujanen T, Kuittinen O, Auvinen P, Marin K, Koivunen P, Sormunen R, Soini Y, Karihtala P.

Histopathology. 2014 Sep;65(3):319-27. doi: 10.1111/his.12389. Epub 2014 Apr 3.

PMID:
24698430
[PubMed - in process]
8.

Hyaluronan synthases (HAS1-3) in stromal and malignant cells correlate with breast cancer grade and predict patient survival.

Auvinen P, Rilla K, Tumelius R, Tammi M, Sironen R, Soini Y, Kosma VM, Mannermaa A, Viikari J, Tammi R.

Breast Cancer Res Treat. 2014 Jan;143(2):277-86. doi: 10.1007/s10549-013-2804-7. Epub 2013 Dec 14.

PMID:
24337597
[PubMed - indexed for MEDLINE]
9.

Gene expression profiles in human and mouse primary cells provide new insights into the differential actions of vitamin D3 metabolites.

Tuohimaa P, Wang JH, Khan S, Kuuslahti M, Qian K, Manninen T, Auvinen P, Vihinen M, Lou YR.

PLoS One. 2013 Oct 8;8(10):e75338. doi: 10.1371/journal.pone.0075338. eCollection 2013. Erratum in: PLoS One. 2013;8(11). doi:10.1371/annotation/9cb2000b-a962-453c-ad8b-088f91095f6d.

PMID:
24116037
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Lep-MAP: fast and accurate linkage map construction for large SNP datasets.

Rastas P, Paulin L, Hanski I, Lehtonen R, Auvinen P.

Bioinformatics. 2013 Dec 15;29(24):3128-34. doi: 10.1093/bioinformatics/btt563. Epub 2013 Sep 26.

PMID:
24078685
[PubMed - indexed for MEDLINE]
11.

Role and regulation of the Flp/Tad pilus in the virulence of Pectobacterium atrosepticum SCRI1043 and Pectobacterium wasabiae SCC3193.

Nykyri J, Mattinen L, Niemi O, Adhikari S, Kõiv V, Somervuo P, Fang X, Auvinen P, Mäe A, Palva ET, Pirhonen M.

PLoS One. 2013 Sep 9;8(9):e73718. doi: 10.1371/journal.pone.0073718. eCollection 2013.

PMID:
24040039
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Outcome of patients with HER2-positive breast cancer treated with or without adjuvant trastuzumab in the Finland Capecitabine Trial (FinXX).

Joensuu H, Kellokumpu-Lehtinen PL, Huovinen R, Jukkola-Vuorinen A, Tanner M, Kokko R, Ahlgren J, Auvinen P, Saarni O, Helle L, Villman K, Nyandoto P, Nilsson G, Leinonen M, Kataja V, Bono P, Lindman H.

Acta Oncol. 2014 Feb;53(2):186-94. doi: 10.3109/0284186X.2013.820840. Epub 2013 Aug 19.

PMID:
23957715
[PubMed - in process]
Free PMC Article
13.

Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield.

Nyyssönen M, Hultman J, Ahonen L, Kukkonen I, Paulin L, Laine P, Itävaara M, Auvinen P.

ISME J. 2014 Jan;8(1):126-38. doi: 10.1038/ismej.2013.125. Epub 2013 Aug 15.

PMID:
23949662
[PubMed - indexed for MEDLINE]
14.

Gene expression patterns underlying the reinstatement of plasticity in the adult visual system.

Tiraboschi E, Guirado R, Greco D, Auvinen P, Maya-Vetencourt JF, Maffei L, Castrén E.

Neural Plast. 2013;2013:605079. doi: 10.1155/2013/605079. Epub 2013 Jun 26.

PMID:
23936678
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Identification and validation of human papillomavirus encoded microRNAs.

Qian K, Pietilä T, Rönty M, Michon F, Frilander MJ, Ritari J, Tarkkanen J, Paulín L, Auvinen P, Auvinen E.

PLoS One. 2013 Jul 30;8(7):e70202. doi: 10.1371/journal.pone.0070202. Print 2013.

PMID:
23936163
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

High-sequence diversity and structural conservation in the human T-cell receptor β junctional region during thymic development.

Tuulasvaara A, Baussand J, Laine P, Paulin L, Salminen J, Auvinen P, Gorochov G, Arstila TP.

Eur J Immunol. 2013 Aug;43(8):2185-93. doi: 10.1002/eji.201343360. Epub 2013 Jun 12.

PMID:
23670527
[PubMed - indexed for MEDLINE]
17.

Mondo/ChREBP-Mlx-regulated transcriptional network is essential for dietary sugar tolerance in Drosophila.

Havula E, Teesalu M, Hyötyläinen T, Seppälä H, Hasygar K, Auvinen P, Orešič M, Sandmann T, Hietakangas V.

PLoS Genet. 2013 Apr;9(4):e1003438. doi: 10.1371/journal.pgen.1003438. Epub 2013 Apr 4.

PMID:
23593032
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Combining high-throughput sequencing with fruit body surveys reveals contrasting life-history strategies in fungi.

Ovaskainen O, Schigel D, Ali-Kovero H, Auvinen P, Paulin L, Nordén B, Nordén J.

ISME J. 2013 Sep;7(9):1696-709. doi: 10.1038/ismej.2013.61. Epub 2013 Apr 11.

PMID:
23575372
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Vimentin, zeb1 and Sip1 are up-regulated in triple-negative and basal-like breast cancers: association with an aggressive tumour phenotype.

Karihtala P, Auvinen P, Kauppila S, Haapasaari KM, Jukkola-Vuorinen A, Soini Y.

Breast Cancer Res Treat. 2013 Feb;138(1):81-90. doi: 10.1007/s10549-013-2442-0. Epub 2013 Feb 15.

PMID:
23412770
[PubMed - indexed for MEDLINE]
20.

Lack of RsmA-mediated control results in constant hypervirulence, cell elongation, and hyperflagellation in Pectobacterium wasabiae.

Kõiv V, Andresen L, Broberg M, Frolova J, Somervuo P, Auvinen P, Pirhonen M, Tenson T, Mäe A.

PLoS One. 2013;8(1):e54248. doi: 10.1371/journal.pone.0054248. Epub 2013 Jan 23.

PMID:
23372695
[PubMed - indexed for MEDLINE]
Free PMC Article

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