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Results: 1 to 20 of 155

1.

Comparative Genomics and Characterization of Hybrid Shigatoxigenic and Enterotoxigenic Escherichia coli (STEC/ETEC) Strains.

Nyholm O, Halkilahti J, Wiklund G, Okeke U, Paulin L, Auvinen P, Haukka K, Siitonen A.

PLoS One. 2015 Aug 27;10(8):e0135936. doi: 10.1371/journal.pone.0135936. eCollection 2015.

2.

Differential Isoform Expression and Selective Muscle Involvement in Muscular Dystrophies.

Huovinen S, Penttilä S, Somervuo P, Keto J, Auvinen P, Vihola A, Huovinen S, Pelin K, Raheem O, Salenius J, Suominen T, Hackman P, Udd B.

Am J Pathol. 2015 Aug 9. pii: S0002-9440(15)00388-0. doi: 10.1016/j.ajpath.2015.06.018. [Epub ahead of print]

PMID:
26269091
3.

[Adjuvant drug therapies for breast cancer].

Huovinen R, Auvinen P, Mattson J, Joensuu H.

Duodecim. 2015;131(1):23-8. Finnish.

PMID:
26245052
4.

Tumor infiltrating CD8+ T lymphocyte count is independent of tumor TLR9 status in treatment naïve triple negative breast cancer and renal cell carcinoma.

Mella M, Kauppila JH, Karihtala P, Lehenkari P, Jukkola-Vuorinen A, Soini Y, Auvinen P, Vaarala MH, Ronkainen H, Kauppila S, Haapasaari KM, Vuopala KS, Selander KS.

Oncoimmunology. 2015 May 22;4(6):e1002726. eCollection 2015 Jun.

PMID:
26155410
5.

The microbiome of the human lower airways: a next generation sequencing perspective.

Aho VT, Pereira PA, Haahtela T, Pawankar R, Auvinen P, Koskinen K.

World Allergy Organ J. 2015 Jun 16;8(1):23. doi: 10.1186/s40413-015-0074-z. eCollection 2015.

6.

Linking Smoking, Coffee, Urate, and Parkinson's Disease - A Role for Gut Microbiota?

Scheperjans F, Pekkonen E, Kaakkola S, Auvinen P.

J Parkinsons Dis. 2015 Apr 16. [Epub ahead of print]

PMID:
25882059
7.

Genome Sequence and Transcriptome Analysis of Meat-Spoilage-Associated Lactic Acid Bacterium Lactococcus piscium MKFS47.

Andreevskaya M, Johansson P, Laine P, Smolander OP, Sonck M, Rahkila R, Jääskeläinen E, Paulin L, Auvinen P, Björkroth J.

Appl Environ Microbiol. 2015 Jun;81(11):3800-11. doi: 10.1128/AEM.00320-15. Epub 2015 Mar 27.

PMID:
25819958
8.

Hunt for the origin of allergy - comparing the Finnish and Russian Karelia.

Haahtela T, Laatikainen T, Alenius H, Auvinen P, Fyhrquist N, Hanski I, von Hertzen L, Jousilahti P, Kosunen TU, Markelova O, Mäkelä MJ, Pantelejev V, Uhanov M, Zilber E, Vartiainen E.

Clin Exp Allergy. 2015 May;45(5):891-901. doi: 10.1111/cea.12527.

PMID:
25772429
9.

Expression of BKV and JCV encoded microRNA in human cerebrospinal fluid, plasma and urine.

Pietilä T, Nummi M, Auvinen P, Mannonen L, Auvinen E.

J Clin Virol. 2015 Apr;65:1-5. doi: 10.1016/j.jcv.2015.01.019. Epub 2015 Jan 28.

PMID:
25766978
10.

Very low mammographic breast density predicts poorer outcome in patients with invasive breast cancer.

Masarwah A, Auvinen P, Sudah M, Rautiainen S, Sutela A, Pelkonen O, Oikari S, Kosma VM, Vanninen R.

Eur Radiol. 2015 Jul;25(7):1875-82. doi: 10.1007/s00330-015-3626-2. Epub 2015 Mar 4.

PMID:
25735512
11.

Multilocus sequence typing of Leuconostoc gelidum subsp. gasicomitatum, a Psychrotrophic lactic acid bacterium causing spoilage of packaged perishable foods.

Rahkila R, Johansson P, Säde E, Paulin L, Auvinen P, Björkroth J.

Appl Environ Microbiol. 2015 Apr;81(7):2474-80. doi: 10.1128/AEM.04013-14. Epub 2015 Jan 23.

PMID:
25616799
12.

Inconsistent Denoising and Clustering Algorithms for Amplicon Sequence Data.

Koskinen K, Auvinen P, Björkroth KJ, Hultman J.

J Comput Biol. 2015 Aug;22(8):743-51. doi: 10.1089/cmb.2014.0268. Epub 2014 Dec 19.

PMID:
25525895
13.

Increased transcriptome sequencing efficiency with modified Mint-2 digestion-ligation protocol.

Kammonen JI, Smolander OP, Sipilä T, Overmyer K, Auvinen P, Paulin L.

Anal Biochem. 2015 May 15;477:38-40. doi: 10.1016/j.ab.2014.12.001. Epub 2014 Dec 13.

PMID:
25513723
14.

Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis.

Ojala T, Kankainen M, Castro J, Cerca N, Edelman S, Westerlund-Wikström B, Paulin L, Holm L, Auvinen P.

BMC Genomics. 2014 Dec 5;15:1070. doi: 10.1186/1471-2164-15-1070.

15.

Gut microbiota are related to Parkinson's disease and clinical phenotype.

Scheperjans F, Aho V, Pereira PA, Koskinen K, Paulin L, Pekkonen E, Haapaniemi E, Kaakkola S, Eerola-Rautio J, Pohja M, Kinnunen E, Murros K, Auvinen P.

Mov Disord. 2015 Mar;30(3):350-8. doi: 10.1002/mds.26069. Epub 2014 Dec 5.

16.

Green areas around homes reduce atopic sensitization in children.

Ruokolainen L, von Hertzen L, Fyhrquist N, Laatikainen T, Lehtomäki J, Auvinen P, Karvonen AM, Hyvärinen A, Tillmann V, Niemelä O, Knip M, Haahtela T, Pekkanen J, Hanski I.

Allergy. 2015 Feb;70(2):195-202. doi: 10.1111/all.12545.

17.

High numbers of macrophages, especially M2-like (CD163-positive), correlate with hyaluronan accumulation and poor outcome in breast cancer.

Tiainen S, Tumelius R, Rilla K, Hämäläinen K, Tammi M, Tammi R, Kosma VM, Oikari S, Auvinen P.

Histopathology. 2015 May;66(6):873-83. doi: 10.1111/his.12607. Epub 2015 Jan 15.

PMID:
25387851
18.

Acinetobacter species in the skin microbiota protect against allergic sensitization and inflammation.

Fyhrquist N, Ruokolainen L, Suomalainen A, Lehtimäki S, Veckman V, Vendelin J, Karisola P, Lehto M, Savinko T, Jarva H, Kosunen TU, Corander J, Auvinen P, Paulin L, von Hertzen L, Laatikainen T, Mäkelä M, Haahtela T, Greco D, Hanski I, Alenius H.

J Allergy Clin Immunol. 2014 Dec;134(6):1301-1309.e11. doi: 10.1016/j.jaci.2014.07.059. Epub 2014 Sep 26.

PMID:
25262465
19.

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera.

Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, de Jong MA, Duplouy A, Smolander OP, Vogel H, McCoy RC, Qian K, Chong WS, Zhang Q, Ahmad F, Haukka JK, Joshi A, Salojärvi J, Wheat CW, Grosse-Wilde E, Hughes D, Katainen R, Pitkänen E, Ylinen J, Waterhouse RM, Turunen M, Vähärautio A, Ojanen SP, Schulman AH, Taipale M, Lawson D, Ukkonen E, Mäkinen V, Goldsmith MR, Holm L, Auvinen P, Frilander MJ, Hanski I.

Nat Commun. 2014 Sep 5;5:4737. doi: 10.1038/ncomms5737.

20.

Plant development. Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation.

Furuta KM, Yadav SR, Lehesranta S, Belevich I, Miyashima S, Heo JO, Vatén A, Lindgren O, De Rybel B, Van Isterdael G, Somervuo P, Lichtenberger R, Rocha R, Thitamadee S, Tähtiharju S, Auvinen P, Beeckman T, Jokitalo E, Helariutta Y.

Science. 2014 Aug 22;345(6199):933-7. doi: 10.1126/science.1253736. Epub 2014 Jul 31.

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