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Results: 1 to 20 of 149

1.

Genome sequence and transcriptome analysis of meat spoilage lactic acid bacterium Lactococcus piscium MKFS47.

Andreevskaya M, Johansson P, Laine P, Smolander OP, Sonck M, Rahkila R, Jääskeläinen E, Paulin L, Auvinen P, Björkroth J.

Appl Environ Microbiol. 2015 Mar 27. pii: AEM.00320-15. [Epub ahead of print]

PMID:
25819958
2.

Hunt for the origin of allergy - comparing the Finnish and Russian Karelia.

Haahtela T, Laatikainen T, Alenius H, Auvinen P, Fyhrquist N, Hanski I, von Hertzen L, Jousilahti P, Kosunen TU, Markelova O, Mäkelä MJ, Pantelejev V, Uhanov M, Zilber E, Vartiainen E.

Clin Exp Allergy. 2015 Mar 13. doi: 10.1111/cea.12527. [Epub ahead of print]

PMID:
25772429
3.

Expression of BKV and JCV encoded microRNA in human cerebrospinal fluid, plasma and urine.

Pietilä T, Nummi M, Auvinen P, Mannonen L, Auvinen E.

J Clin Virol. 2015 Apr;65:1-5. doi: 10.1016/j.jcv.2015.01.019. Epub 2015 Jan 28.

PMID:
25766978
4.

Very low mammographic breast density predicts poorer outcome in patients with invasive breast cancer.

Masarwah A, Auvinen P, Sudah M, Rautiainen S, Sutela A, Pelkonen O, Oikari S, Kosma VM, Vanninen R.

Eur Radiol. 2015 Mar 4. [Epub ahead of print]

PMID:
25735512
5.

Multilocus Sequence Typing of Leuconostoc gelidum subsp. gasicomitatum, a Psychrotrophic Lactic Acid Bacterium Causing Spoilage of Packaged Perishable Foods.

Rahkila R, Johansson P, Säde E, Paulin L, Auvinen P, Björkroth J.

Appl Environ Microbiol. 2015 Apr 1;81(7):2474-80. doi: 10.1128/AEM.04013-14. Epub 2015 Jan 23.

PMID:
25616799
6.

Inconsistent Denoising and Clustering Algorithms for Amplicon Sequence Data.

Koskinen K, Auvinen P, Björkroth KJ, Hultman J.

J Comput Biol. 2014 Dec 19. [Epub ahead of print]

PMID:
25525895
7.

Increased transcriptome sequencing efficiency with modified Mint-2 digestion-ligation protocol.

Kammonen JI, Smolander OP, Sipilä T, Overmyer K, Auvinen P, Paulin L.

Anal Biochem. 2014 Dec 13;477:38-40. doi: 10.1016/j.ab.2014.12.001. [Epub ahead of print]

PMID:
25513723
8.

Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis.

Ojala T, Kankainen M, Castro J, Cerca N, Edelman S, Westerlund-Wikström B, Paulin L, Holm L, Auvinen P.

BMC Genomics. 2014 Dec 5;15:1070. doi: 10.1186/1471-2164-15-1070.

9.

Gut microbiota are related to Parkinson's disease and clinical phenotype.

Scheperjans F, Aho V, Pereira PA, Koskinen K, Paulin L, Pekkonen E, Haapaniemi E, Kaakkola S, Eerola-Rautio J, Pohja M, Kinnunen E, Murros K, Auvinen P.

Mov Disord. 2015 Mar;30(3):350-8. doi: 10.1002/mds.26069. Epub 2014 Dec 5.

10.

Green areas around homes reduce atopic sensitization in children.

Ruokolainen L, von Hertzen L, Fyhrquist N, Laatikainen T, Lehtomäki J, Auvinen P, Karvonen AM, Hyvärinen A, Tillmann V, Niemelä O, Knip M, Haahtela T, Pekkanen J, Hanski I.

Allergy. 2015 Feb;70(2):195-202. doi: 10.1111/all.12545.

11.

High numbers of macrophages, especially M2-like (CD163-positive), correlate with hyaluronan accumulation and poor outcome in breast cancer.

Tiainen S, Tumelius R, Rilla K, Hämäläinen K, Tammi M, Tammi R, Kosma VM, Oikari S, Auvinen P.

Histopathology. 2015 May;66(6):873-83. doi: 10.1111/his.12607. Epub 2015 Jan 15.

PMID:
25387851
12.

Acinetobacter species in the skin microbiota protect against allergic sensitization and inflammation.

Fyhrquist N, Ruokolainen L, Suomalainen A, Lehtimäki S, Veckman V, Vendelin J, Karisola P, Lehto M, Savinko T, Jarva H, Kosunen TU, Corander J, Auvinen P, Paulin L, von Hertzen L, Laatikainen T, Mäkelä M, Haahtela T, Greco D, Hanski I, Alenius H.

J Allergy Clin Immunol. 2014 Dec;134(6):1301-1309.e11. doi: 10.1016/j.jaci.2014.07.059. Epub 2014 Sep 26.

PMID:
25262465
13.

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera.

Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, de Jong MA, Duplouy A, Smolander OP, Vogel H, McCoy RC, Qian K, Chong WS, Zhang Q, Ahmad F, Haukka JK, Joshi A, Salojärvi J, Wheat CW, Grosse-Wilde E, Hughes D, Katainen R, Pitkänen E, Ylinen J, Waterhouse RM, Turunen M, Vähärautio A, Ojanen SP, Schulman AH, Taipale M, Lawson D, Ukkonen E, Mäkinen V, Goldsmith MR, Holm L, Auvinen P, Frilander MJ, Hanski I.

Nat Commun. 2014 Sep 5;5:4737. doi: 10.1038/ncomms5737.

14.

Plant development. Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation.

Furuta KM, Yadav SR, Lehesranta S, Belevich I, Miyashima S, Heo JO, Vatén A, Lindgren O, De Rybel B, Van Isterdael G, Somervuo P, Lichtenberger R, Rocha R, Thitamadee S, Tähtiharju S, Auvinen P, Beeckman T, Jokitalo E, Helariutta Y.

Science. 2014 Aug 22;345(6199):933-7. doi: 10.1126/science.1253736. Epub 2014 Jul 31.

PMID:
25081480
15.

Genomics and Proteomics Provide New Insight into the Commensal and Pathogenic Lifestyles of Bovine- and Human-Associated Staphylococcus epidermidis Strains.

Savijoki K, Iivanainen A, Siljamäki P, Laine PK, Paulin L, Karonen T, Pyörälä S, Kankainen M, Nyman TA, Salomäki T, Koskinen P, Holm L, Simojoki H, Taponen S, Sukura A, Kalkkinen N, Auvinen P, Varmanen P.

J Proteome Res. 2014 Jul 18. [Epub ahead of print]

PMID:
25014494
16.

Transcriptome analysis reveals signature of adaptation to landscape fragmentation.

Somervuo P, Kvist J, Ikonen S, Auvinen P, Paulin L, Koskinen P, Holm L, Taipale M, Duplouy A, Ruokolainen A, Saarnio S, Sirén J, Kohonen J, Corander J, Frilander MJ, Ahola V, Hanski I.

PLoS One. 2014 Jul 2;9(7):e101467. doi: 10.1371/journal.pone.0101467. eCollection 2014.

17.

Comparative proteome profiling of bovine and human Staphylococcus epidermidis strains for screening specifically expressed virulence and adaptation proteins.

Siljamäki P, Varmanen P, Kankainen M, Pyörälä S, Karonen T, Iivanainen A, Auvinen P, Paulin L, Laine PK, Taponen S, Simojoki H, Sukura A, Nyman TA, Savijoki K.

Proteomics. 2014 Aug;14(16):1890-4. doi: 10.1002/pmic.201300275. Epub 2014 Jul 10.

PMID:
24909406
18.

Transcriptome dynamics-based operon prediction in prokaryotes.

Fortino V, Smolander OP, Auvinen P, Tagliaferri R, Greco D.

BMC Bioinformatics. 2014 May 16;15:145. doi: 10.1186/1471-2105-15-145.

19.

Oxidative stress markers and mitochondrial antioxidant enzyme expression are increased in aggressive Hodgkin lymphomas.

Bur H, Haapasaari KM, Turpeenniemi-Hujanen T, Kuittinen O, Auvinen P, Marin K, Koivunen P, Sormunen R, Soini Y, Karihtala P.

Histopathology. 2014 Sep;65(3):319-27. doi: 10.1111/his.12389. Epub 2014 Apr 3.

PMID:
24698430
20.

Hyaluronan synthases (HAS1-3) in stromal and malignant cells correlate with breast cancer grade and predict patient survival.

Auvinen P, Rilla K, Tumelius R, Tammi M, Sironen R, Soini Y, Kosma VM, Mannermaa A, Viikari J, Tammi R.

Breast Cancer Res Treat. 2014 Jan;143(2):277-86. doi: 10.1007/s10549-013-2804-7. Epub 2013 Dec 14.

PMID:
24337597
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