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Results: 1 to 20 of 49

1.

Best practices in bioinformatics training for life scientists.

Via A, Blicher T, Bongcam-Rudloff E, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, Fernandes PL, van Gelder C, Jacob J, Jimenez RC, Loveland J, Moran F, Mulder N, Nyrönen T, Rother K, Schneider MV, Attwood TK.

Brief Bioinform. 2013 Sep;14(5):528-37. doi: 10.1093/bib/bbt043. Epub 2013 Jun 25.

PMID:
23803301
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

iAnn: an event sharing platform for the life sciences.

Jimenez RC, Albar JP, Bhak J, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, Ioannidis V, Judge DP, Kahlem P, Korpelainen E, Kraus HJ, Loveland J, Mayer C, McDowall J, Moran F, Mulder N, Nyronen T, Rother K, Salazar GA, Schneider R, Via A, Villaveces JM, Yu P, Schneider MV, Attwood TK, Corpas M.

Bioinformatics. 2013 Aug 1;29(15):1919-21. doi: 10.1093/bioinformatics/btt306. Epub 2013 Jun 5.

PMID:
23742982
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Biochemical and biophysical characterization of four EphB kinase domains reveals contrasting thermodynamic, kinetic and inhibition profiles.

Overman RC, Debreczeni JE, Truman CM, McAlister MS, Attwood TK.

Biosci Rep. 2013 Jun 5;33(3). pii: e00040. doi: 10.1042/BSR20130028.

PMID:
23627399
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Implementation of proteomic biomarkers: making it work.

Mischak H, Ioannidis JP, Argiles A, Attwood TK, Bongcam-Rudloff E, Broenstrup M, Charonis A, Chrousos GP, Delles C, Dominiczak A, Dylag T, Ehrich J, Egido J, Findeisen P, Jankowski J, Johnson RW, Julien BA, Lankisch T, Leung HY, Maahs D, Magni F, Manns MP, Manolis E, Mayer G, Navis G, Novak J, Ortiz A, Persson F, Peter K, Riese HH, Rossing P, Sattar N, Spasovski G, Thongboonkerd V, Vanholder R, Schanstra JP, Vlahou A.

Eur J Clin Invest. 2012 Sep;42(9):1027-36. doi: 10.1111/j.1365-2362.2012.02674.x. Epub 2012 Apr 21.

PMID:
22519700
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012.

Attwood TK, Coletta A, Muirhead G, Pavlopoulou A, Philippou PB, Popov I, Romá-Mateo C, Theodosiou A, Mitchell AL.

Database (Oxford). 2012 Apr 15;2012:bas019. doi: 10.1093/database/bas019. Print 2012.

PMID:
22508994
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Biocurators and biocuration: surveying the 21st century challenges.

Burge S, Attwood TK, Bateman A, Berardini TZ, Cherry M, O'Donovan C, Xenarios L, Gaudet P.

Database (Oxford). 2012 Mar 20;2012:bar059. doi: 10.1093/database/bar059. Print 2012.

PMID:
22434828
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.

Schneider MV, Walter P, Blatter MC, Watson J, Brazas MD, Rother K, Budd A, Via A, van Gelder CW, Jacob J, Fernandes P, Nyrönen TH, De Las Rivas J, Blicher T, Jimenez RC, Loveland J, McDowall J, Jones P, Vaughan BW, Lopez R, Attwood TK, Brooksbank C.

Brief Bioinform. 2012 May;13(3):383-9. doi: 10.1093/bib/bbr064. Epub 2011 Nov 22. Review.

PMID:
22110242
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

InterPro in 2011: new developments in the family and domain prediction database.

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, McMenamin C, Mi H, Mutowo-Muellenet P, Mulder N, Natale D, Orengo C, Pesseat S, Punta M, Quinn AF, Rivoire C, Sangrador-Vegas A, Selengut JD, Sigrist CJ, Scheremetjew M, Tate J, Thimmajanarthanan M, Thomas PD, Wu CH, Yeats C, Yong SY.

Nucleic Acids Res. 2012 Jan;40(Database issue):D306-12. doi: 10.1093/nar/gkr948. Epub 2011 Nov 16.

PMID:
22096229
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

NucleaRDB: information system for nuclear receptors.

Vroling B, Thorne D, McDermott P, Joosten HJ, Attwood TK, Pettifer S, Vriend G.

Nucleic Acids Res. 2012 Jan;40(Database issue):D377-80. doi: 10.1093/nar/gkr960. Epub 2011 Nov 7.

PMID:
22064856
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Ten simple rules for developing a short bioinformatics training course.

Via A, De Las Rivas J, Attwood TK, Landsman D, Brazas MD, Leunissen JA, Tramontano A, Schneider MV.

PLoS Comput Biol. 2011 Oct;7(10):e1002245. doi: 10.1371/journal.pcbi.1002245. Epub 2011 Oct 27. No abstract available.

PMID:
22046119
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Integrating GPCR-specific information with full text articles.

Vroling B, Thorne D, McDermott P, Attwood TK, Vriend G, Pettifer S.

BMC Bioinformatics. 2011 Sep 12;12:362. doi: 10.1186/1471-2105-12-362.

PMID:
21910883
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Towards BioDBcore: a community-defined information specification for biological databases.

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Karsch Mizrachi I, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C; BioDBCore Working Group.

Database (Oxford). 2011 Jan 4;2011:baq027. doi: 10.1093/database/baq027. Print 2011.

PMID:
21205783
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Towards BioDBcore: a community-defined information specification for biological databases.

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Mizrachi IK, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C; BioDBCore Working Group.

Nucleic Acids Res. 2011 Jan;39(Database issue):D7-10. doi: 10.1093/nar/gkq1173. Epub 2010 Nov 18.

PMID:
21097465
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Utopia documents: linking scholarly literature with research data.

Attwood TK, Kell DB, McDermott P, Marsh J, Pettifer SR, Thorne D.

Bioinformatics. 2010 Sep 15;26(18):i568-74. doi: 10.1093/bioinformatics/btq383.

PMID:
20823323
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

WIWS: a protein structure bioinformatics Web service collection.

Hekkelman ML, Te Beek TA, Pettifer SR, Thorne D, Attwood TK, Vriend G.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W719-23. doi: 10.1093/nar/gkq453. Epub 2010 May 25.

PMID:
20501602
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The EMBRACE web service collection.

Pettifer S, Ison J, Kalas M, Thorne D, McDermott P, Jonassen I, Liaquat A, Fernández JM, Rodriguez JM; INB-Partners, Pisano DG, Blanchet C, Uludag M, Rice P, Bartaseviciute E, Rapacki K, Hekkelman M, Sand O, Stockinger H, Clegg AB, Bongcam-Rudloff E, Salzemann J, Breton V, Attwood TK, Cameron G, Vriend G.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W683-8. doi: 10.1093/nar/gkq297. Epub 2010 May 12.

PMID:
20462862
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Low-complexity regions within protein sequences have position-dependent roles.

Coletta A, Pinney JW, Solís DY, Marsh J, Pettifer SR, Attwood TK.

BMC Syst Biol. 2010 Apr 13;4:43. doi: 10.1186/1752-0509-4-43.

PMID:
20385029
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Calling International Rescue: knowledge lost in literature and data landslide!

Attwood TK, Kell DB, McDermott P, Marsh J, Pettifer SR, Thorne D.

Biochem J. 2009 Dec 10;424(3):317-33. doi: 10.1042/BJ20091474. Review.

PMID:
19929850
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Visualising biological data: a semantic approach to tool and database integration.

Pettifer S, Thorne D, McDermott P, Marsh J, Villéger A, Kell DB, Attwood TK.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S19. doi: 10.1186/1471-2105-10-S6-S19.

PMID:
19534744
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

LRRCE: a leucine-rich repeat cysteine capping motif unique to the chordate lineage.

Park H, Huxley-Jones J, Boot-Handford RP, Bishop PN, Attwood TK, Bella J.

BMC Genomics. 2008 Dec 12;9:599. doi: 10.1186/1471-2164-9-599.

PMID:
19077264
[PubMed - indexed for MEDLINE]
Free PMC Article

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