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Items: 19

1.

Genetic analysis of Thai cattle reveals a Southeast Asian indicine ancestry.

Wangkumhang P, Wilantho A, Shaw PJ, Flori L, Moazami-Goudarzi K, Gautier M, Duangjinda M, Assawamakin A, Tongsima S.

PeerJ. 2015 Oct 27;3:e1318. doi: 10.7717/peerj.1318. eCollection 2015.

2.

HLA-DRB1 and HLA-DQB1 Are Associated with Adult-Onset Immunodeficiency with Acquired Anti-Interferon-Gamma Autoantibodies.

Pithukpakorn M, Roothumnong E, Angkasekwinai N, Suktitipat B, Assawamakin A, Luangwedchakarn V, Umrod P, Thongnoppakhun W, Foongladda S, Suputtamongkol Y.

PLoS One. 2015 May 26;10(5):e0128481. doi: 10.1371/journal.pone.0128481. eCollection 2015.

3.

Mycophenolic acid AUC in Thai kidney transplant recipients receiving low dose mycophenolate and its association with UGT2B7 polymorphisms.

Pithukpakorn M, Tiwawanwong T, Lalerd Y, Assawamakin A, Premasathian N, Tasanarong A, Thongnoppakhun W, Vongwiwatana A.

Pharmgenomics Pers Med. 2014 Dec 5;7:379-85. doi: 10.2147/PGPM.S72760. eCollection 2014.

4.

Structural and functional diversity of free-living microorganisms in reef surface, Kra island, Thailand.

Somboonna N, Wilantho A, Assawamakin A, Monanunsap S, Sangsrakru D, Tangphatsornruang S, Tongsima S.

BMC Genomics. 2014 Jul 18;15:607. doi: 10.1186/1471-2164-15-607.

5.

Microbial ecology of Thailand tsunami and non-tsunami affected terrestrials.

Somboonna N, Wilantho A, Jankaew K, Assawamakin A, Sangsrakru D, Tangphatsornruang S, Tongsima S.

PLoS One. 2014 Apr 7;9(4):e94236. doi: 10.1371/journal.pone.0094236. eCollection 2014.

6.

Population structure of four Thai indigenous chicken breeds.

Mekchay S, Supakankul P, Assawamakin A, Wilantho A, Chareanchim W, Tongsima S.

BMC Genet. 2014 Mar 27;15:40. doi: 10.1186/1471-2156-15-40.

7.

MetaSel: a metaphase selection tool using a Gaussian-based classification technique.

Uttamatanin R, Yuvapoositanon P, Intarapanich A, Kaewkamnerd S, Phuksaritanon R, Assawamakin A, Tongsima S.

BMC Bioinformatics. 2013;14 Suppl 16:S13. doi: 10.1186/1471-2105-14-S16-S13. Epub 2013 Oct 22.

8.

Insight into the peopling of Mainland Southeast Asia from Thai population genetic structure.

Wangkumhang P, Shaw PJ, Chaichoompu K, Ngamphiw C, Assawamakin A, Nuinoon M, Sripichai O, Svasti S, Fucharoen S, Praphanphoj V, Tongsima S.

PLoS One. 2013 Nov 4;8(11):e79522. doi: 10.1371/journal.pone.0079522. eCollection 2013.

9.

Biomarker selection and classification of "-omics" data using a two-step bayes classification framework.

Assawamakin A, Prueksaaroon S, Kulawonganunchai S, Shaw PJ, Varavithya V, Ruangrajitpakorn T, Tongsima S.

Biomed Res Int. 2013;2013:148014. doi: 10.1155/2013/148014. Epub 2013 Sep 11.

10.

Distal effect of amino acid substitutions in CYP2C9 polymorphic variants causes differences in interatomic interactions against (S)-warfarin.

Lertkiatmongkol P, Assawamakin A, White G, Chopra G, Rongnoparut P, Samudrala R, Tongsima S.

PLoS One. 2013 Sep 2;8(9):e74053. doi: 10.1371/journal.pone.0074053. eCollection 2013. Erratum in: PLoS One. 2013;8(9). doi:10.1371/annotation/416be1ef-f439-445a-96f8-b1d2f01c6957.

11.

Metagenomic profiles of free-living archaea, bacteria and small eukaryotes in coastal areas of Sichang island, Thailand.

Somboonna N, Assawamakin A, Wilantho A, Tangphatsornruang S, Tongsima S.

BMC Genomics. 2012;13 Suppl 7:S29. doi: 10.1186/1471-2164-13-S7-S29. Epub 2012 Dec 13.

12.

iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies.

Piriyapongsa J, Ngamphiw C, Intarapanich A, Kulawonganunchai S, Assawamakin A, Bootchai C, Shaw PJ, Tongsima S.

BMC Genomics. 2012;13 Suppl 7:S2. doi: 10.1186/1471-2164-13-S7-S2. Epub 2012 Dec 13.

13.

PanSNPdb: the Pan-Asian SNP genotyping database.

Ngamphiw C, Assawamakin A, Xu S, Shaw PJ, Yang JO, Ghang H, Bhak J, Liu E, Tongsima S; HUGO Pan-Asian SNP Consortium.

PLoS One. 2011;6(6):e21451. doi: 10.1371/journal.pone.0021451. Epub 2011 Jun 23.

14.

Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and structure.

Limpiti T, Intarapanich A, Assawamakin A, Shaw PJ, Wangkumhang P, Piriyapongsa J, Ngamphiw C, Tongsima S.

BMC Bioinformatics. 2011 Jun 23;12:255. doi: 10.1186/1471-2105-12-255.

15.

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.

Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, Ruangrit U, Agavatpanitch G, Tongsima S.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S4. doi: 10.1186/1471-2164-10-S3-S4.

16.

Iterative pruning PCA improves resolution of highly structured populations.

Intarapanich A, Shaw PJ, Assawamakin A, Wangkumhang P, Ngamphiw C, Chaichoompu K, Piriyapongsa J, Tongsima S.

BMC Bioinformatics. 2009 Nov 23;10:382. doi: 10.1186/1471-2105-10-382.

17.

Detecting purely epistatic multi-locus interactions by an omnibus permutation test on ensembles of two-locus analyses.

Wongseree W, Assawamakin A, Piroonratana T, Sinsomros S, Limwongse C, Chaiyaratana N.

BMC Bioinformatics. 2009 Sep 17;10:294. doi: 10.1186/1471-2105-10-294.

18.

VarDetect: a nucleotide sequence variation exploratory tool.

Ngamphiw C, Kulawonganunchai S, Assawamakin A, Jenwitheesuk E, Tongsima S.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S9. doi: 10.1186/1471-2105-9-S12-S9.

19.

WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations.

Wangkumhang P, Chaichoompu K, Ngamphiw C, Ruangrit U, Chanprasert J, Assawamakin A, Tongsima S.

BMC Genomics. 2007 Aug 14;8:275.

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