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Results: 1 to 20 of 173

1.

Intra-fraction motion of the prostate during treatment with helical tomotherapy.

Thomas SJ, Ashburner M, Tudor GS, Treeby J, Dean J, Routsis D, Rimmer YL, Russell SG, Burnet NG.

Radiother Oncol. 2013 Dec;109(3):482-6. doi: 10.1016/j.radonc.2013.09.011. Epub 2013 Oct 12.

PMID:
24128804
[PubMed - in process]
2.

Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila.

von Grotthuss M, Ashburner M, Ranz JM.

Genome Res. 2010 Aug;20(8):1084-96. doi: 10.1101/gr.103713.109. Epub 2010 Jul 2.

PMID:
20601587
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Integrating phenotype ontologies across multiple species.

Mungall CJ, Gkoutos GV, Smith CL, Haendel MA, Lewis SE, Ashburner M.

Genome Biol. 2010 Jan 8;11(1):R2. doi: 10.1186/gb-2010-11-1-r2.

PMID:
20064205
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Entity/quality-based logical definitions for the human skeletal phenome using PATO.

Gkoutos GV, Mungall C, Dolken S, Ashburner M, Lewis S, Hancock J, Schofield P, Kohler S, Robinson PN.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:7069-72. doi: 10.1109/IEMBS.2009.5333362.

PMID:
19964203
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Linking human diseases to animal models using ontology-based phenotype annotation.

Washington NL, Haendel MA, Mungall CJ, Ashburner M, Westerfield M, Lewis SE.

PLoS Biol. 2009 Nov;7(11):e1000247. doi: 10.1371/journal.pbio.1000247. Epub 2009 Nov 24.

PMID:
19956802
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The bacterial symbiont Wolbachia induces resistance to RNA viral infections in Drosophila melanogaster.

Teixeira L, Ferreira A, Ashburner M.

PLoS Biol. 2008 Dec 23;6(12):e2. doi: 10.1371/journal.pbio.1000002.

PMID:
19222304
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

FlyBase: enhancing Drosophila Gene Ontology annotations.

Tweedie S, Ashburner M, Falls K, Leyland P, McQuilton P, Marygold S, Millburn G, Osumi-Sutherland D, Schroeder A, Seal R, Zhang H; FlyBase Consortium.

Nucleic Acids Res. 2009 Jan;37(Database issue):D555-9. doi: 10.1093/nar/gkn788. Epub 2008 Oct 23.

PMID:
18948289
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.

Taylor CF, Field D, Sansone SA, Aerts J, Apweiler R, Ashburner M, Ball CA, Binz PA, Bogue M, Booth T, Brazma A, Brinkman RR, Michael Clark A, Deutsch EW, Fiehn O, Fostel J, Ghazal P, Gibson F, Gray T, Grimes G, Hancock JM, Hardy NW, Hermjakob H, Julian RK Jr, Kane M, Kettner C, Kinsinger C, Kolker E, Kuiper M, Le Novère N, Leebens-Mack J, Lewis SE, Lord P, Mallon AM, Marthandan N, Masuya H, McNally R, Mehrle A, Morrison N, Orchard S, Quackenbush J, Reecy JM, Robertson DG, Rocca-Serra P, Rodriguez H, Rosenfelder H, Santoyo-Lopez J, Scheuermann RH, Schober D, Smith B, Snape J, Stoeckert CJ Jr, Tipton K, Sterk P, Untergasser A, Vandesompele J, Wiemann S.

Nat Biotechnol. 2008 Aug;26(8):889-96. doi: 10.1038/nbt.1411. No abstract available.

PMID:
18688244
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Calling on a million minds for community annotation in WikiProteins.

Mons B, Ashburner M, Chichester C, van Mulligen E, Weeber M, den Dunnen J, van Ommen GJ, Musen M, Cockerill M, Hermjakob H, Mons A, Packer A, Pacheco R, Lewis S, Berkeley A, Melton W, Barris N, Wales J, Meijssen G, Moeller E, Roes PJ, Borner K, Bairoch A.

Genome Biol. 2008;9(5):R89. doi: 10.1186/gb-2008-9-5-r89. Epub 2008 May 28.

PMID:
18507872
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The minimum information about a genome sequence (MIGS) specification.

Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A.

Nat Biotechnol. 2008 May;26(5):541-7. doi: 10.1038/nbt1360.

PMID:
18464787
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Drosophila Genomes by the Baker's Dozen. Preface.

Ashburner M.

Genetics. 2007 Nov;177(3):1263-8. No abstract available.

PMID:
18039865
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ; OBI Consortium, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Shah N, Whetzel PL, Lewis S.

Nat Biotechnol. 2007 Nov;25(11):1251-5.

PMID:
17989687
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

ChEBI: a database and ontology for chemical entities of biological interest.

Degtyarenko K, de Matos P, Ennis M, Hastings J, Zbinden M, McNaught A, Alcántara R, Darsow M, Guedj M, Ashburner M.

Nucleic Acids Res. 2008 Jan;36(Database issue):D344-50. Epub 2007 Oct 11.

PMID:
17932057
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The ribosomal protein genes and Minute loci of Drosophila melanogaster.

Marygold SJ, Roote J, Reuter G, Lambertsson A, Ashburner M, Millburn GH, Harrison PM, Yu Z, Kenmochi N, Kaufman TC, Leevers SJ, Cook KR.

Genome Biol. 2007;8(10):R216.

PMID:
17927810
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The DrosDel deletion collection: a Drosophila genomewide chromosomal deficiency resource.

Ryder E, Ashburner M, Bautista-Llacer R, Drummond J, Webster J, Johnson G, Morley T, Chan YS, Blows F, Coulson D, Reuter G, Baisch H, Apelt C, Kauk A, Rudolph T, Kube M, Klimm M, Nickel C, Szidonya J, Maróy P, Pal M, Rasmuson-Lestander A, Ekström K, Stocker H, Hugentobler C, Hafen E, Gubb D, Pflugfelder G, Dorner C, Mechler B, Schenkel H, Marhold J, Serras F, Corominas M, Punset A, Roote J, Russell S.

Genetics. 2007 Sep;177(1):615-29. Epub 2007 Aug 24.

PMID:
17720900
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

FlyMine: an integrated database for Drosophila and Anopheles genomics.

Lyne R, Smith R, Rutherford K, Wakeling M, Varley A, Guillier F, Janssens H, Ji W, Mclaren P, North P, Rana D, Riley T, Sullivan J, Watkins X, Woodbridge M, Lilley K, Russell S, Ashburner M, Mizuguchi K, Micklem G.

Genome Biol. 2007;8(7):R129.

PMID:
17615057
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Principles of genome evolution in the Drosophila melanogaster species group.

Ranz JM, Maurin D, Chan YS, von Grotthuss M, Hillier LW, Roote J, Ashburner M, Bergman CM.

PLoS Biol. 2007 Jun;5(6):e152.

PMID:
17550304
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Phenotype ontologies: the bridge between genomics and evolution.

Mabee PM, Ashburner M, Cronk Q, Gkoutos GV, Haendel M, Segerdell E, Mungall C, Westerfield M.

Trends Ecol Evol. 2007 Jul;22(7):345-50. Epub 2007 Apr 9.

PMID:
17416439
[PubMed - indexed for MEDLINE]
19.

Maintenance of a Drosophila laboratory: general procedures.

Ashburner M, Roote J.

CSH Protoc. 2007 Mar 1;2007:pdb.ip35. doi: 10.1101/pdb.ip35.

PMID:
21357030
[PubMed]
20.

Culture of Drosophila: the laboratory setup.

Ashburner M, Roote J.

CSH Protoc. 2007 Mar 1;2007:pdb.ip34. doi: 10.1101/pdb.ip34.

PMID:
21357029
[PubMed]

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