Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 29

1.

BESST - Efficient scaffolding of large fragmented assemblies.

Sahlin K, Vezzi F, Nystedt B, Lundeberg J, Arvestad L.

BMC Bioinformatics. 2014 Aug 15;15(1):281. doi: 10.1186/1471-2105-15-281.

PMID:
25128196
[PubMed - in process]
Free Article
2.

Forensic informativity of ~3000 bp of coding sequence of domestic dog mtDNA.

Angleby H, Oskarsson M, Pang J, Zhang YP, Leitner T, Braham C, Arvestad L, Lundeberg J, Webb KM, Savolainen P.

J Forensic Sci. 2014 Jul;59(4):898-908. doi: 10.1111/1556-4029.12504. Epub 2014 May 11.

PMID:
24814664
[PubMed - in process]
3.

Quantitative synteny scoring improves homology inference and partitioning of gene families.

Ali R, Muhammad S, Khan M, Arvestad L.

BMC Bioinformatics. 2013;14 Suppl 15:S12. doi: 10.1186/1471-2105-14-S15-S12. Epub 2013 Oct 15.

PMID:
24564516
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A Bayesian method for analyzing lateral gene transfer.

Sjöstrand J, Tofigh A, Daubin V, Arvestad L, Sennblad B, Lagergren J.

Syst Biol. 2014 May;63(3):409-20. doi: 10.1093/sysbio/syu007. Epub 2014 Feb 20.

PMID:
24562812
[PubMed - indexed for MEDLINE]
5.

Fastphylo: fast tools for phylogenetics.

Khan MA, Elias I, Sjölund E, Nylander K, Guimera RV, Schobesberger R, Schmitzberger P, Lagergren J, Arvestad L.

BMC Bioinformatics. 2013 Nov 20;14:334. doi: 10.1186/1471-2105-14-334.

PMID:
24255987
[PubMed - indexed for MEDLINE]
Free Article
6.

Excap: maximization of haplotypic diversity of linked markers.

Kahles A, Sarqume F, Savolainen P, Arvestad L.

PLoS One. 2013 Nov 7;8(11):e79012. doi: 10.1371/journal.pone.0079012. eCollection 2013.

PMID:
24244403
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

GAM-NGS: genomic assemblies merger for next generation sequencing.

Vicedomini R, Vezzi F, Scalabrin S, Arvestad L, Policriti A.

BMC Bioinformatics. 2013;14 Suppl 7:S6. doi: 10.1186/1471-2105-14-S7-S6. Epub 2013 Apr 22.

PMID:
23815503
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

GenPhyloData: realistic simulation of gene family evolution.

Sjöstrand J, Arvestad L, Lagergren J, Sennblad B.

BMC Bioinformatics. 2013 Jun 27;14:209. doi: 10.1186/1471-2105-14-209.

PMID:
23803001
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The Norway spruce genome sequence and conifer genome evolution.

Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S.

Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22.

PMID:
23698360
[PubMed - indexed for MEDLINE]
10.

DLRS: gene tree evolution in light of a species tree.

Sjöstrand J, Sennblad B, Arvestad L, Lagergren J.

Bioinformatics. 2012 Nov 15;28(22):2994-5. doi: 10.1093/bioinformatics/bts548. Epub 2012 Sep 14.

PMID:
22982573
[PubMed - indexed for MEDLINE]
Free Article
11.

Improved gap size estimation for scaffolding algorithms.

Sahlin K, Street N, Lundeberg J, Arvestad L.

Bioinformatics. 2012 Sep 1;28(17):2215-22.

PMID:
22923455
[PubMed - indexed for MEDLINE]
Free Article
12.

Evolution and human tissue expression of the Cres/Testatin subgroup genes, a reproductive tissue specific subgroup of the type 2 cystatins.

Frygelius J, Arvestad L, Wedell A, Töhönen V.

Evol Dev. 2010 May-Jun;12(3):329-42. doi: 10.1111/j.1525-142X.2010.00418.x.

PMID:
20565543
[PubMed - indexed for MEDLINE]
13.

Classification of DNA sequences using Bloom filters.

Stranneheim H, Käller M, Allander T, Andersson B, Arvestad L, Lundeberg J.

Bioinformatics. 2010 Jul 1;26(13):1595-600. doi: 10.1093/bioinformatics/btq230. Epub 2010 May 13.

PMID:
20472541
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Identification of the cellulose synthase genes from the Oomycete Saprolegnia monoica and effect of cellulose synthesis inhibitors on gene expression and enzyme activity.

Fugelstad J, Bouzenzana J, Djerbi S, Guerriero G, Ezcurra I, Teeri TT, Arvestad L, Bulone V.

Fungal Genet Biol. 2009 Oct;46(10):759-67. doi: 10.1016/j.fgb.2009.07.001. Epub 2009 Jul 7.

PMID:
19589393
[PubMed - indexed for MEDLINE]
15.

Simultaneous Bayesian gene tree reconstruction and reconciliation analysis.

Akerborg O, Sennblad B, Arvestad L, Lagergren J.

Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5714-9. doi: 10.1073/pnas.0806251106. Epub 2009 Mar 19.

PMID:
19299507
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

MAP20, a microtubule-associated protein in the secondary cell walls of hybrid aspen, is a target of the cellulose synthesis inhibitor 2,6-dichlorobenzonitrile.

Rajangam AS, Kumar M, Aspeborg H, Guerriero G, Arvestad L, Pansri P, Brown CJ, Hober S, Blomqvist K, Divne C, Ezcurra I, Mellerowicz E, Sundberg B, Bulone V, Teeri TT.

Plant Physiol. 2008 Nov;148(3):1283-94. doi: 10.1104/pp.108.121913. Epub 2008 Sep 19.

PMID:
18805954
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evolution of a domain conserved in microtubule-associated proteins of eukaryotes.

Rajangam AS, Yang H, Teeri TT, Arvestad L.

Adv Appl Bioinform Chem. 2008;1:51-69. Epub 2008 Sep 23.

PMID:
21918606
[PubMed]
Free PMC Article
18.

primetv: a viewer for reconciled trees.

Sennblad B, Schreil E, Berglund Sonnhammer AC, Lagergren J, Arvestad L.

BMC Bioinformatics. 2007 May 7;8:148.

PMID:
17484781
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms.

Roth C, Rastogi S, Arvestad L, Dittmar K, Light S, Ekman D, Liberles DA.

J Exp Zool B Mol Dev Evol. 2007 Jan 15;308(1):58-73.

PMID:
16838295
[PubMed - indexed for MEDLINE]
20.

Efficient methods for estimating amino acid replacement rates.

Arvestad L.

J Mol Evol. 2006 Jun;62(6):663-73. Epub 2006 Apr 28.

PMID:
16752207
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk