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Items: 1 to 20 of 140

1.

Epithelial, metabolic and innate immunity transcriptomic signatures differentiating the rumen from other sheep and mammalian gastrointestinal tract tissues.

Xiang R, Oddy VH, Archibald AL, Vercoe PE, Dalrymple BP.

PeerJ. 2016 Mar 8;4:e1762. doi: 10.7717/peerj.1762. eCollection 2016.

2.

Genome-wide association reveals QTL for growth, bone and in vivo carcass traits as assessed by computed tomography in Scottish Blackface lambs.

Matika O, Riggio V, Anselme-Moizan M, Law AS, Pong-Wong R, Archibald AL, Bishop SC.

Genet Sel Evol. 2016 Feb 8;48:11. doi: 10.1186/s12711-016-0191-3.

3.

Identification of Low-Confidence Regions in the Pig Reference Genome (Sscrofa10.2).

Warr A, Robert C, Hume D, Archibald AL, Deeb N, Watson M.

Front Genet. 2015 Nov 27;6:338. doi: 10.3389/fgene.2015.00338. eCollection 2015.

4.

Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome.

Robert C, Kapetanovic R, Beraldi D, Watson M, Archibald AL, Hume DA.

BMC Genomics. 2015 Nov 18;16:970. doi: 10.1186/s12864-015-2111-2.

5.

Efficiency of genomic prediction for boar taint reduction in Danish Landrace pigs.

Lukić B, Pong-Wong R, Rowe SJ, de Koning DJ, Velander I, Haley CS, Archibald AL, Woolliams JA.

Anim Genet. 2015 Dec;46(6):607-16. doi: 10.1111/age.12369. Epub 2015 Oct 9.

PMID:
26449733
6.

Lawsonia intracellularis infection of intestinal crypt cells is associated with specific depletion of secreted MUC2 in goblet cells.

Bengtsson RJ, MacIntyre N, Guthrie J, Wilson AD, Finlayson H, Matika O, Pong-Wong R, Smith SH, Archibald AL, Ait-Ali T.

Vet Immunol Immunopathol. 2015 Nov 15;168(1-2):61-7. doi: 10.1016/j.vetimm.2015.08.005. Epub 2015 Aug 19.

7.

Third Report on Chicken Genes and Chromosomes 2015.

Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, Crooijmans RP, Damas J, Davis RV, de Koning DJ, Delany ME, Derrien T, Desta TT, Dunn IC, Dunn M, Ellegren H, Eöry L, Erb I, Farré M, Fasold M, Fleming D, Flicek P, Fowler KE, Frésard L, Froman DP, Garceau V, Gardner PP, Gheyas AA, Griffin DK, Groenen MA, Haaf T, Hanotte O, Hart A, Häsler J, Hedges SB, Hertel J, Howe K, Hubbard A, Hume DA, Kaiser P, Kedra D, Kemp SJ, Klopp C, Kniel KE, Kuo R, Lagarrigue S, Lamont SJ, Larkin DM, Lawal RA, Markland SM, McCarthy F, McCormack HA, McPherson MC, Motegi A, Muljo SA, Münsterberg A, Nag R, Nanda I, Neuberger M, Nitsche A, Notredame C, Noyes H, O'Connor R, O'Hare EA, Oler AJ, Ommeh SC, Pais H, Persia M, Pitel F, Preeyanon L, Prieto Barja P, Pritchett EM, Rhoads DD, Robinson CM, Romanov MN, Rothschild M, Roux PF, Schmidt CJ, Schneider AS, Schwartz MG, Searle SM, Skinner MA, Smith CA, Stadler PF, Steeves TE, Steinlein C, Sun L, Takata M, Ulitsky I, Wang Q, Wang Y, Warren WC, Wood JM, Wragg D, Zhou H.

Cytogenet Genome Res. 2015;145(2):78-179. doi: 10.1159/000430927. Epub 2015 Jul 14. No abstract available.

PMID:
26282327
8.

Complete Genome Sequence of a Pathogenic Genotype 1 Subtype 3 Porcine Reproductive and Respiratory Syndrome Virus (Strain SU1-Bel) from Pig Primary Tissue.

Lu ZH, Wilson AD, Wang X, Frossard JP, Stadejek T, Archibald AL, Ait-Ali T.

Genome Announc. 2015 May 21;3(3). pii: e00340-15. doi: 10.1128/genomeA.00340-15.

9.

Detection of a quantitative trait locus associated with resistance to infection with Trichuris suis in pigs.

Skallerup P, Thamsborg SM, Jørgensen CB, Mejer H, Göring HH, Archibald AL, Fredholm M, Nejsum P.

Vet Parasitol. 2015 Jun 15;210(3-4):264-9. doi: 10.1016/j.vetpar.2015.03.014. Epub 2015 Mar 27.

PMID:
25858116
10.

Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H; FAANG Consortium.

Genome Biol. 2015 Mar 25;16:57. doi: 10.1186/s13059-015-0622-4.

11.

Beyond the whole genome consensus: unravelling of PRRSV phylogenomics using next generation sequencing technologies.

Lu ZH, Archibald AL, Ait-Ali T.

Virus Res. 2014 Dec 19;194:167-74. doi: 10.1016/j.virusres.2014.10.004. Epub 2014 Oct 12. Review.

12.

Design and development of exome capture sequencing for the domestic pig (Sus scrofa).

Robert C, Fuentes-Utrilla P, Troup K, Loecherbach J, Turner F, Talbot R, Archibald AL, Mileham A, Deeb N, Hume DA, Watson M.

BMC Genomics. 2014 Jul 3;15:550. doi: 10.1186/1471-2164-15-550.

13.

The sheep genome illuminates biology of the rumen and lipid metabolism.

Jiang Y, Xie M, Chen W, Talbot R, Maddox JF, Faraut T, Wu C, Muzny DM, Li Y, Zhang W, Stanton JA, Brauning R, Barris WC, Hourlier T, Aken BL, Searle SM, Adelson DL, Bian C, Cam GR, Chen Y, Cheng S, DeSilva U, Dixen K, Dong Y, Fan G, Franklin IR, Fu S, Fuentes-Utrilla P, Guan R, Highland MA, Holder ME, Huang G, Ingham AB, Jhangiani SN, Kalra D, Kovar CL, Lee SL, Liu W, Liu X, Lu C, Lv T, Mathew T, McWilliam S, Menzies M, Pan S, Robelin D, Servin B, Townley D, Wang W, Wei B, White SN, Yang X, Ye C, Yue Y, Zeng P, Zhou Q, Hansen JB, Kristiansen K, Gibbs RA, Flicek P, Warkup CC, Jones HE, Oddy VH, Nicholas FW, McEwan JC, Kijas JW, Wang J, Worley KC, Archibald AL, Cockett N, Xu X, Wang W, Dalrymple BP.

Science. 2014 Jun 6;344(6188):1168-73. doi: 10.1126/science.1252806.

14.

Analysis of the genetics of boar taint reveals both single SNPs and regional effects.

Rowe SJ, Karacaören B, de Koning DJ, Lukic B, Hastings-Clark N, Velander I, Haley CS, Archibald AL.

BMC Genomics. 2014 Jun 3;15:424. doi: 10.1186/1471-2164-15-424.

15.

Down-regulation of mechanisms involved in cell transport and maintenance of mucosal integrity in pigs infected with Lawsonia intracellularis.

Smith SH, Wilson AD, Van Ettinger I, MacIntyre N, Archibald AL, Ait-Ali T.

Vet Res. 2014 May 20;45:55. doi: 10.1186/1297-9716-45-55.

16.

Genomic variation in macrophage-cultured European porcine reproductive and respiratory syndrome virus Olot/91 revealed using ultra-deep next generation sequencing.

Lu ZH, Brown A, Wilson AD, Calvert JG, Balasch M, Fuentes-Utrilla P, Loecherbach J, Turner F, Talbot R, Archibald AL, Ait-Ali T.

Virol J. 2014 Mar 4;11:42. doi: 10.1186/1743-422X-11-42.

17.

Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar).

Houston RD, Taggart JB, Cézard T, Bekaert M, Lowe NR, Downing A, Talbot R, Bishop SC, Archibald AL, Bron JE, Penman DJ, Davassi A, Brew F, Tinch AE, Gharbi K, Hamilton A.

BMC Genomics. 2014 Feb 6;15:90. doi: 10.1186/1471-2164-15-90.

18.

A genome-wide linkage analysis for reproductive traits in F2 Large White × Meishan cross gilts.

Hernandez SC, Finlayson HA, Ashworth CJ, Haley CS, Archibald AL.

Anim Genet. 2014 Apr;45(2):191-7. doi: 10.1111/age.12123. Epub 2014 Jan 23.

19.

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus.

Frantz LA, Schraiber JG, Madsen O, Megens HJ, Bosse M, Paudel Y, Semiadi G, Meijaard E, Li N, Crooijmans RP, Archibald AL, Slatkin M, Schook LB, Larson G, Groenen MA.

Genome Biol. 2013;14(9):R107.

20.

The impact of breed and tissue compartment on the response of pig macrophages to lipopolysaccharide.

Kapetanovic R, Fairbairn L, Downing A, Beraldi D, Sester DP, Freeman TC, Tuggle CK, Archibald AL, Hume DA.

BMC Genomics. 2013 Aug 28;14:581. doi: 10.1186/1471-2164-14-581.

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