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Results: 1 to 20 of 234

1.

Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis.

Weaver JM, Ross-Innes CS, Shannon N, Lynch AG, Forshew T, Barbera M, Murtaza M, Ong CA, Lao-Sirieix P, Dunning MJ, Smith L, Smith ML, Anderson CL, Carvalho B, O'Donovan M, Underwood TJ, May AP, Grehan N, Hardwick R, Davies J, Oloumi A, Aparicio S, Caldas C, Eldridge MD, Edwards PA, Rosenfeld N, Tavaré S, Fitzgerald RC; the OCCAMS Consortium.

Nat Genet. 2014 Jun 22. doi: 10.1038/ng.3013. [Epub ahead of print]

PMID:
24952744
[PubMed - as supplied by publisher]
2.

Impact of MLL5 expression on decitabine efficacy and DNA methylation in acute myeloid leukemia.

Yun H, Damm F, Yap D, Schwarzer A, Chaturvedi A, Jyotsana N, Lübbert M, Bullinger L, Döhner K, Geffers R, Aparicio S, Humphries RK, Ganser A, Heuser M.

Haematologica. 2014 Jun 3. pii: haematol.2013.101386. [Epub ahead of print]

PMID:
24895338
[PubMed - as supplied by publisher]
Free Article
3.

TP53 Mutation Spectrum in Breast Cancer Is Subtype Specific and Has Distinct Prognostic Relevance.

Silwal-Pandit L, Vollan HK, Chin SF, Rueda OM, McKinney S, Osako T, Quigley DA, Kristensen VN, Aparicio S, Børresen-Dale AL, Caldas C, Langerød A.

Clin Cancer Res. 2014 Jul 1;20(13):3569-80. doi: 10.1158/1078-0432.CCR-13-2943. Epub 2014 May 6.

PMID:
24803582
[PubMed - in process]
4.

A transgenic mouse model demonstrating the oncogenic role of mutations in the polycomb-group gene EZH2 in lymphomagenesis.

Berg T, Thoene S, Yap D, Wee T, Schoeler N, Rosten P, Lim E, Bilenky M, Mungall AJ, Oellerich T, Lee S, Lai CK, Umlandt P, Salmi A, Chang H, Yue L, Lai D, Cheng SW, Morin RD, Hirst M, Serve H, Marra MA, Morin GB, Gascoyne RD, Aparicio SA, Humphries RK.

Blood. 2014 Jun 19;123(25):3914-24. doi: 10.1182/blood-2012-12-473439. Epub 2014 May 6.

PMID:
24802772
[PubMed - in process]
5.

Processed pseudogenes acquired somatically during cancer development.

Cooke SL, Shlien A, Marshall J, Pipinikas CP, Martincorena I, Tubio JM, Li Y, Menzies A, Mudie L, Ramakrishna M, Yates L, Davies H, Bolli N, Bignell GR, Tarpey PS, Behjati S, Nik-Zainal S, Papaemmanuil E, Teixeira VH, Raine K, O'Meara S, Dodoran MS, Teague JW, Butler AP, Iacobuzio-Donahue C, Santarius T, Grundy RG, Malkin D, Greaves M, Munshi N, Flanagan AM, Bowtell D, Martin S, Larsimont D, Reis-Filho JS, Boussioutas A, Taylor JA, Hayes ND, Janes SM, Futreal PA, Stratton MR, McDermott U, Campbell PJ; ICGC Breast Cancer Group.

Nat Commun. 2014 Apr 9;5:3644. doi: 10.1038/ncomms4644.

PMID:
24714652
[PubMed - in process]
Free PMC Article
6.

A quantum chemistry study of natural gas hydrates.

Atilhan M, Pala N, Aparicio S.

J Mol Model. 2014 Apr;20(4):2182. doi: 10.1007/s00894-014-2182-z. Epub 2014 Mar 16.

PMID:
24633777
[PubMed - in process]
7.

PyClone: statistical inference of clonal population structure in cancer.

Roth A, Khattra J, Yap D, Wan A, Laks E, Biele J, Ha G, Aparicio S, Bouchard-Côté A, Shah SP.

Nat Methods. 2014 Apr;11(4):396-8. doi: 10.1038/nmeth.2883. Epub 2014 Mar 16.

PMID:
24633410
[PubMed - indexed for MEDLINE]
8.

The breast cancer oncogene EMSY represses transcription of antimetastatic microRNA miR-31.

Viré E, Curtis C, Davalos V, Git A, Robson S, Villanueva A, Vidal A, Barbieri I, Aparicio S, Esteller M, Caldas C, Kouzarides T.

Mol Cell. 2014 Mar 6;53(5):806-18. doi: 10.1016/j.molcel.2014.01.029. Epub 2014 Feb 27. Erratum in: Mol Cell. 2014 Apr 10;54(1):203. Barbieri, Isaia [added].

PMID:
24582497
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Insights from quantum chemistry into piperazine-based ionic liquids and their behavior with regard to CO₂.

Sanz V, Alcalde R, Atilhan M, Aparicio S.

J Mol Model. 2014 Mar;20(3):2107. doi: 10.1007/s00894-014-2107-x. Epub 2014 Feb 18.

PMID:
24535108
[PubMed - in process]
10.

Monitoring of freeze-thaw cycles in concrete using embedded sensors and ultrasonic imaging.

Ranz J, Aparicio S, Romero H, Casati MJ, Molero M, González M.

Sensors (Basel). 2014 Jan 29;14(2):2280-304. doi: 10.3390/s140202280.

PMID:
24481231
[PubMed]
Free PMC Article
11.

Clonal analysis via barcoding reveals diverse growth and differentiation of transplanted mouse and human mammary stem cells.

Nguyen LV, Makarem M, Carles A, Moksa M, Kannan N, Pandoh P, Eirew P, Osako T, Kardel M, Cheung AM, Kennedy W, Tse K, Zeng T, Zhao Y, Humphries RK, Aparicio S, Eaves CJ, Hirst M.

Cell Stem Cell. 2014 Feb 6;14(2):253-63. doi: 10.1016/j.stem.2013.12.011. Epub 2014 Jan 16.

PMID:
24440600
[PubMed - in process]
12.

Insights on cholinium- and piperazinium-based ionic liquids under external electric fields: a molecular dynamics study.

Aparicio S, Atilhan M, Pala N.

J Chem Phys. 2013 Dec 14;139(22):224502. doi: 10.1063/1.4839635.

PMID:
24329073
[PubMed - in process]
13.

The omics of triple-negative breast cancers.

Xu H, Eirew P, Mullaly SC, Aparicio S.

Clin Chem. 2014 Jan;60(1):122-33. doi: 10.1373/clinchem.2013.207167. Epub 2013 Dec 2. Review.

PMID:
24298072
[PubMed - indexed for MEDLINE]
14.

Intake of melatonin increases tryptophan hydroxylase type 1 activity in aged rats: Preliminary study.

Moranta D, Barceló P, Aparicio S, Garau C, Sarubbo F, Ramis M, Nicolau C, Esteban S.

Exp Gerontol. 2014 Jan;49:1-4. doi: 10.1016/j.exger.2013.10.012. Epub 2013 Nov 1.

PMID:
24189046
[PubMed - in process]
15.

Solution NMR structure and histone binding of the PHD domain of human MLL5.

Lemak A, Yee A, Wu H, Yap D, Zeng H, Dombrovski L, Houliston S, Aparicio S, Arrowsmith CH.

PLoS One. 2013 Oct 9;8(10):e77020. doi: 10.1371/journal.pone.0077020. eCollection 2013.

PMID:
24130829
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Signatures of mutational processes in human cancer.

Alexandrov LB, Nik-Zainal S, Wedge DC, Aparicio SA, Behjati S, Biankin AV, Bignell GR, Bolli N, Borg A, Børresen-Dale AL, Boyault S, Burkhardt B, Butler AP, Caldas C, Davies HR, Desmedt C, Eils R, Eyfjörd JE, Foekens JA, Greaves M, Hosoda F, Hutter B, Ilicic T, Imbeaud S, Imielinski M, Jäger N, Jones DT, Jones D, Knappskog S, Kool M, Lakhani SR, López-Otín C, Martin S, Munshi NC, Nakamura H, Northcott PA, Pajic M, Papaemmanuil E, Paradiso A, Pearson JV, Puente XS, Raine K, Ramakrishna M, Richardson AL, Richter J, Rosenstiel P, Schlesner M, Schumacher TN, Span PN, Teague JW, Totoki Y, Tutt AN, Valdés-Mas R, van Buuren MM, van 't Veer L, Vincent-Salomon A, Waddell N, Yates LR; Australian Pancreatic Cancer Genome Initiative; ICGC Breast Cancer Consortium; ICGC MMML-Seq Consortium; ICGC PedBrain, Zucman-Rossi J, Futreal PA, McDermott U, Lichter P, Meyerson M, Grimmond SM, Siebert R, Campo E, Shibata T, Pfister SM, Campbell PJ, Stratton MR.

Nature. 2013 Aug 22;500(7463):415-21. doi: 10.1038/nature12477. Epub 2013 Aug 14. Erratum in: Nature. 2013 Oct 10;502(7470):258. Imielinsk, Marcin [corrected to Imielinski, Marcin].

PMID:
23945592
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

TDP1 and PARP1 deficiency are cytotoxic to rhabdomyosarcoma cells.

Fam HK, Walton C, Mitra SA, Chowdhury M, Osborne N, Choi K, Sun G, Wong PC, O'Sullivan MJ, Turashvili G, Aparicio S, Triche TJ, Bond M, Pallen CJ, Boerkoel CF.

Mol Cancer Res. 2013 Oct;11(10):1179-92. doi: 10.1158/1541-7786.MCR-12-0575. Epub 2013 Aug 2.

PMID:
23913164
[PubMed - indexed for MEDLINE]
18.

Limitations and high pressure behavior of MOF-5 for CO2 capture.

Jung JY, Karadas F, Zulfiqar S, Deniz E, Aparicio S, Atilhan M, Yavuz CT, Han SM.

Phys Chem Chem Phys. 2013 Sep 14;15(34):14319-27. doi: 10.1039/c3cp51768c. Epub 2013 Jul 22.

PMID:
23877231
[PubMed]
19.

[Oncocytic tumors of the adrenal gland].

Capela A, Martinho A, Paixão Duarte F, Garcia H, Rocha Pires F, Theias Manso R, Aparício S, Costa AM.

Acta Med Port. 2013 Jan-Feb;26(1):61-6. Epub 2013 Apr 24. Portuguese.

PMID:
23697360
[PubMed - indexed for MEDLINE]
Free Article
20.

Improving breast cancer survival analysis through competition-based multidimensional modeling.

Bilal E, Dutkowski J, Guinney J, Jang IS, Logsdon BA, Pandey G, Sauerwine BA, Shimoni Y, Moen Vollan HK, Mecham BH, Rueda OM, Tost J, Curtis C, Alvarez MJ, Kristensen VN, Aparicio S, Børresen-Dale AL, Caldas C, Califano A, Friend SH, Ideker T, Schadt EE, Stolovitzky GA, Margolin AA.

PLoS Comput Biol. 2013;9(5):e1003047. doi: 10.1371/journal.pcbi.1003047. Epub 2013 May 9.

PMID:
23671412
[PubMed - indexed for MEDLINE]
Free PMC Article

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