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Multi-epitope Models Explain How Pre-existing Antibodies Affect the Generation of Broadly Protective Responses to Influenza.

Zarnitsyna VI, Lavine J, Ellebedy A, Ahmed R, Antia R.

PLoS Pathog. 2016 Jun 23;12(6):e1005692. doi: 10.1371/journal.ppat.1005692. eCollection 2016 Jun.


Mathematical Model Reveals the Role of Memory CD8 T Cell Populations in Recall Responses to Influenza.

Zarnitsyna VI, Handel A, McMaster SR, Hayward SL, Kohlmeier JE, Antia R.

Front Immunol. 2016 May 9;7:165. doi: 10.3389/fimmu.2016.00165. eCollection 2016.


Masking of antigenic epitopes by antibodies shapes the humoral immune response to influenza.

Zarnitsyna VI, Ellebedy AH, Davis C, Jacob J, Ahmed R, Antia R.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 5;370(1676). pii: 20140248. doi: 10.1098/rstb.2014.0248.


Initial viral load determines the magnitude of the human CD8 T cell response to yellow fever vaccination.

Akondy RS, Johnson PL, Nakaya HI, Edupuganti S, Mulligan MJ, Lawson B, Miller JD, Pulendran B, Antia R, Ahmed R.

Proc Natl Acad Sci U S A. 2015 Mar 10;112(10):3050-5. doi: 10.1073/pnas.1500475112. Epub 2015 Feb 23.


How sticky should a virus be? The impact of virus binding and release on transmission fitness using influenza as an example.

Handel A, Akin V, Pilyugin SS, Zarnitsyna V, Antia R.

J R Soc Interface. 2014 Jan 15;11(92):20131083. doi: 10.1098/rsif.2013.1083. Print 2014 Mar 6.


Estimating the diversity, completeness, and cross-reactivity of the T cell repertoire.

Zarnitsyna VI, Evavold BD, Schoettle LN, Blattman JN, Antia R.

Front Immunol. 2013 Dec 26;4:485. doi: 10.3389/fimmu.2013.00485. Review.


A population biological approach to understanding the maintenance and loss of the T-cell repertoire during aging.

Johnson PL, Goronzy JJ, Antia R.

Immunology. 2014 Jun;142(2):167-75. doi: 10.1111/imm.12244. Review.


Population-expression models of immune response.

Stromberg SP, Antia R, Nemenman I.

Phys Biol. 2013 Jun;10(3):035010. doi: 10.1088/1478-3975/10/3/035010. Epub 2013 Jun 4.


Rhabdomyosarcoma in a terrestrial tortoise (Geochelone nigra) in Nigeria: a case report.

Eyarefe OD, Antia RE, Oguntoye CO, Abiola OO, Alaka OO, Ogunsola JO.

J S Afr Vet Assoc. 2012 Nov 30;83(1):300. doi: 10.4102/jsava.v83i1.300.


Peripheral selection rather than thymic involution explains sudden contraction in naive CD4 T-cell diversity with age.

Johnson PL, Yates AJ, Goronzy JJ, Antia R.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21432-7. doi: 10.1073/pnas.1209283110. Epub 2012 Dec 10.


On the role of CD8 T cells in the control of persistent infections.

Stromberg SP, Antia R.

Biophys J. 2012 Oct 17;103(8):1802-10. doi: 10.1016/j.bpj.2012.07.059. Epub 2012 Oct 16.


How to minimize the attack rate during multiple influenza outbreaks in a heterogeneous population.

Fung IC, Antia R, Handel A.

PLoS One. 2012;7(6):e36573. doi: 10.1371/journal.pone.0036573. Epub 2012 Jun 11.


How do antigenically varying pathogens avoid cross-reactive responses to invariant antigens?

Johnson PL, Kochin BF, Ahmed R, Antia R.

Proc Biol Sci. 2012 Jul 22;279(1739):2777-85. doi: 10.1098/rspb.2012.0005. Epub 2012 Mar 21.


Virus replication strategies and the critical CTL numbers required for the control of infection.

Yates AJ, Van Baalen M, Antia R.

PLoS Comput Biol. 2011 Nov;7(11):e1002274. doi: 10.1371/journal.pcbi.1002274. Epub 2011 Nov 17.


Vaccination by delayed treatment of infection.

Stromberg SP, Antia R.

Vaccine. 2011 Dec 6;29(52):9624-31. doi: 10.1016/j.vaccine.2011.10.047. Epub 2011 Oct 30.


The global spread of drug-resistant influenza.

Chao DL, Bloom JD, Kochin BF, Antia R, Longini IM Jr.

J R Soc Interface. 2012 Apr 7;9(69):648-56. doi: 10.1098/rsif.2011.0427. Epub 2011 Aug 24.


Vaccination alters the balance between protective immunity, exhaustion, escape, and death in chronic infections.

Johnson PL, Kochin BF, McAfee MS, Stromnes IM, Regoes RR, Ahmed R, Blattman JN, Antia R.

J Virol. 2011 Jun;85(11):5565-70. doi: 10.1128/JVI.00166-11. Epub 2011 Mar 16.


Parasite evolution and life history theory.

Kochin BF, Bull JJ, Antia R.

PLoS Biol. 2010 Oct 19;8(10):e1000524. doi: 10.1371/journal.pbio.1000524. No abstract available.


On the control of acute rodent malaria infections by innate immunity.

Kochin BF, Yates AJ, de Roode JC, Antia R.

PLoS One. 2010 May 6;5(5):e10444. doi: 10.1371/journal.pone.0010444.


Intervention strategies for an influenza pandemic taking into account secondary bacterial infections.

Handel A, Longini IM Jr, Antia R.

Epidemics. 2009 Sep;1(3):185-95. doi: 10.1016/j.epidem.2009.09.001.

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