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Results: 16

1.

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, Aerts J, Akune Y, Antezana E, Arakawa K, Aranda B, Baran J, Bolleman J, Bonnal RJ, Buttigieg PL, Campbell MP, Chen YA, Chiba H, Cock PJ, Cohen KB, Constantin A, Duck G, Dumontier M, Fujisawa T, Fujiwara T, Goto N, Hoehndorf R, Igarashi Y, Itaya H, Ito M, Iwasaki W, Kalaš M, Katoda T, Kim T, Kokubu A, Komiyama Y, Kotera M, Laibe C, Lapp H, Lütteke T, Marshall MS, Mori T, Mori H, Morita M, Murakami K, Nakao M, Narimatsu H, Nishide H, Nishimura Y, Nystrom-Persson J, Ogishima S, Okamura Y, Okuda S, Oshita K, Packer NH, Prins P, Ranzinger R, Rocca-Serra P, Sansone S, Sawaki H, Shin SH, Splendiani A, Strozzi F, Tadaka S, Toukach P, Uchiyama I, Umezaki M, Vos R, Whetzel PL, Yamada I, Yamasaki C, Yamashita R, York WS, Zmasek CM, Kawamoto S, Takagi T.

J Biomed Semantics. 2014 Feb 5;5(1):5. doi: 10.1186/2041-1480-5-5.

PMID:
24495517
[PubMed]
Free PMC Article
2.

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.

Katayama T, Wilkinson MD, Micklem G, Kawashima S, Yamaguchi A, Nakao M, Yamamoto Y, Okamoto S, Oouchida K, Chun HW, Aerts J, Afzal H, Antezana E, Arakawa K, Aranda B, Belleau F, Bolleman J, Bonnal RJ, Chapman B, Cock PJ, Eriksson T, Gordon PM, Goto N, Hayashi K, Horn H, Ishiwata R, Kaminuma E, Kasprzyk A, Kawaji H, Kido N, Kim YJ, Kinjo AR, Konishi F, Kwon KH, Labarga A, Lamprecht AL, Lin Y, Lindenbaum P, McCarthy L, Morita H, Murakami K, Nagao K, Nishida K, Nishimura K, Nishizawa T, Ogishima S, Ono K, Oshita K, Park KJ, Prins P, Saito TL, Samwald M, Satagopam VP, Shigemoto Y, Smith R, Splendiani A, Sugawara H, Taylor J, Vos RA, Withers D, Yamasaki C, Zmasek CM, Kawamoto S, Okubo K, Asai K, Takagi T.

J Biomed Semantics. 2013 Feb 11;4(1):6. doi: 10.1186/2041-1480-4-6.

PMID:
23398680
[PubMed]
Free PMC Article
3.

OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows.

Aranguren ME, Fernández-Breis JT, Mungall C, Antezana E, González AR, Wilkinson MD.

J Biomed Semantics. 2013 Jan 4;4(1):2. doi: 10.1186/2041-1480-4-2.

PMID:
23286517
[PubMed]
Free PMC Article
4.

The emergence of Semantic Systems Biology.

Antezana E, Mironov V, Kuiper M.

N Biotechnol. 2013 Mar 25;30(3):286-90. doi: 10.1016/j.nbt.2012.11.008. Epub 2012 Nov 16. Review.

PMID:
23165099
[PubMed - in process]
5.

Gauging triple stores with actual biological data.

Mironov V, Seethappan N, Blondé W, Antezana E, Splendiani A, Kuiper M.

BMC Bioinformatics. 2012 Jan 25;13 Suppl 1:S3. doi: 10.1186/1471-2105-13-S1-S3.

PMID:
22373359
[PubMed - in process]
Free PMC Article
6.

Reasoning with bio-ontologies: using relational closure rules to enable practical querying.

Blondé W, Mironov V, Venkatesan A, Antezana E, De Baets B, Kuiper M.

Bioinformatics. 2011 Jun 1;27(11):1562-8. doi: 10.1093/bioinformatics/btr164. Epub 2011 Apr 5.

PMID:
21471019
[PubMed - indexed for MEDLINE]
Free Article
7.

ONTO-ToolKit: enabling bio-ontology engineering via Galaxy.

Antezana E, Venkatesan A, Mungall C, Mironov V, Kuiper M.

BMC Bioinformatics. 2010 Dec 21;11 Suppl 12:S8. doi: 10.1186/1471-2105-11-S12-S8.

PMID:
21210987
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

BioGateway: a semantic systems biology tool for the life sciences.

Antezana E, Blondé W, Egaña M, Rutherford A, Stevens R, De Baets B, Mironov V, Kuiper M.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S11. doi: 10.1186/1471-2105-10-S10-S11.

PMID:
19796395
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process.

Antezana E, Egaña M, Blondé W, Illarramendi A, Bilbao I, De Baets B, Stevens R, Mironov V, Kuiper M.

Genome Biol. 2009;10(5):R58. doi: 10.1186/gb-2009-10-5-r58. Epub 2009 May 29.

PMID:
19480664
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Biological knowledge management: the emerging role of the Semantic Web technologies.

Antezana E, Kuiper M, Mironov V.

Brief Bioinform. 2009 Jul;10(4):392-407. doi: 10.1093/bib/bbp024. Epub 2009 May 19. Review.

PMID:
19457869
[PubMed - indexed for MEDLINE]
Free Article
11.

Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology.

Aranguren ME, Antezana E, Kuiper M, Stevens R.

BMC Bioinformatics. 2008 Apr 29;9 Suppl 5:S1. doi: 10.1186/1471-2105-9-S5-S1.

PMID:
18460183
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

ONTO-PERL: an API for supporting the development and analysis of bio-ontologies.

Antezana E, Egaña M, De Baets B, Kuiper M, Mironov V.

Bioinformatics. 2008 Mar 15;24(6):885-7. doi: 10.1093/bioinformatics/btn042. Epub 2008 Feb 1.

PMID:
18245124
[PubMed - indexed for MEDLINE]
Free Article
13.

The aMAZE LightBench: a web interface to a relational database of cellular processes.

Lemer C, Antezana E, Couche F, Fays F, Santolaria X, Janky R, Deville Y, Richelle J, Wodak SJ.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D443-8.

PMID:
14681453
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Polytenosynovitis caused by Toxoplasma gondii.

Antezana E.

S Afr Med J. 1979 Nov 3;56(19):746. No abstract available.

PMID:
505207
[PubMed - indexed for MEDLINE]
15.

Epidemic disease due to serogroup C Neisseria meningitidis in Saõ Paulo, Brazil.

Souza de Morais J, Munford RS, Risi JB, Antezana E, Feldman RA.

J Infect Dis. 1974 May;129(5):568-71. No abstract available.

PMID:
4207309
[PubMed - indexed for MEDLINE]
16.

Hemorrhagic exanthem of Bolivia. Studies of an unusual hemorrhagic disease in high altitude dwellers at sea level.

Noble J Jr, Valverde L, Eguia OE, Serrate O, Antezana E.

Am J Epidemiol. 1974 Feb;99(2):123-30. No abstract available.

PMID:
4810627
[PubMed - indexed for MEDLINE]

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