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Results: 1 to 20 of 58

1.

Natural selection on coding and non-coding DNA sequences is associated with virulence genes in a plant pathogenic fungus.

Rech GE, Sanz-Martín JM, Anisimova M, Sukno SA, Thon MR.

Genome Biol Evol. 2014 Sep 4. pii: evu192. [Epub ahead of print]

PMID:
25193312
[PubMed - as supplied by publisher]
Free Article
2.

Unraveling patterns of site-to-site synonymous rates variation and associated gene properties of protein domains and families.

Dimitrieva S, Anisimova M.

PLoS One. 2014 Jun 4;9(6):e95034. doi: 10.1371/journal.pone.0095034. eCollection 2014.

PMID:
24896293
[PubMed - in process]
Free PMC Article
3.

Deep conservation of human protein tandem repeats within the eukaryotes.

Schaper E, Gascuel O, Anisimova M.

Mol Biol Evol. 2014 May;31(5):1132-48. doi: 10.1093/molbev/msu062. Epub 2014 Feb 3.

PMID:
24497029
[PubMed - in process]
Free PMC Article
4.

Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex.

Peeters N, Carrère S, Anisimova M, Plener L, Cazalé AC, Genin S.

BMC Genomics. 2013 Dec 6;14:859. doi: 10.1186/1471-2164-14-859.

PMID:
24314259
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

State-of the art methodologies dictate new standards for phylogenetic analysis.

Anisimova M, Liberles DA, Philippe H, Provan J, Pupko T, von Haeseler A.

BMC Evol Biol. 2013 Aug 1;13:161. doi: 10.1186/1471-2148-13-161. Review.

PMID:
23914788
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Graph-based modeling of tandem repeats improves global multiple sequence alignment.

Szalkowski AM, Anisimova M.

Nucleic Acids Res. 2013 Sep;41(17):e162. doi: 10.1093/nar/gkt628. Epub 2013 Jul 22.

PMID:
23877246
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models.

Gil M, Zanetti MS, Zoller S, Anisimova M.

Mol Biol Evol. 2013 Jun;30(6):1270-80. doi: 10.1093/molbev/mst034. Epub 2013 Feb 23.

PMID:
23436912
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Repeat or not repeat?--Statistical validation of tandem repeat prediction in genomic sequences.

Schaper E, Kajava AV, Hauser A, Anisimova M.

Nucleic Acids Res. 2012 Nov 1;40(20):10005-17. doi: 10.1093/nar/gks726. Epub 2012 Aug 25.

PMID:
22923522
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Gene copy number variation and its significance in cyanobacterial phylogeny.

Schirrmeister BE, Dalquen DA, Anisimova M, Bagheri HC.

BMC Microbiol. 2012 Aug 15;12:177. doi: 10.1186/1471-2180-12-177.

PMID:
22894826
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Selection on the protein-coding genome.

Kosiol C, Anisimova M.

Methods Mol Biol. 2012;856:113-40. doi: 10.1007/978-1-61779-585-5_5.

PMID:
22399457
[PubMed - indexed for MEDLINE]
11.

ALF--a simulation framework for genome evolution.

Dalquen DA, Anisimova M, Gonnet GH, Dessimoz C.

Mol Biol Evol. 2012 Apr;29(4):1115-23. doi: 10.1093/molbev/msr268. Epub 2011 Dec 8.

PMID:
22160766
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Evolution of cyanobacterial morphotypes: Taxa required for improved phylogenomic approaches.

Schirrmeister BE, Anisimova M, Antonelli A, Bagheri HC.

Commun Integr Biol. 2011 Jul;4(4):424-7. doi: 10.4161/cib.4.4.16183. Epub 2011 Jul 1.

PMID:
21966561
[PubMed]
Free PMC Article
13.

Coevolution of amino acid residues in the key photosynthetic enzyme Rubisco.

Wang M, Kapralov MV, Anisimova M.

BMC Evol Biol. 2011 Sep 23;11:266. doi: 10.1186/1471-2148-11-266.

PMID:
21942934
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Functional diversification of the GALA type III effector family contributes to Ralstonia solanacearum adaptation on different plant hosts.

Remigi P, Anisimova M, Guidot A, Genin S, Peeters N.

New Phytol. 2011 Dec;192(4):976-87. doi: 10.1111/j.1469-8137.2011.03854.x. Epub 2011 Sep 8.

PMID:
21902695
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Complex interplay of evolutionary forces in the ladybird homeobox genes of Drosophila melanogaster.

Balakirev ES, Anisimova M, Ayala FJ.

PLoS One. 2011;6(7):e22613. doi: 10.1371/journal.pone.0022613. Epub 2011 Jul 22.

PMID:
21799919
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Markov models of amino acid substitution to study proteins with intrinsically disordered regions.

Szalkowski AM, Anisimova M.

PLoS One. 2011;6(5):e20488. doi: 10.1371/journal.pone.0020488. Epub 2011 May 27.

PMID:
21647374
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes.

Anisimova M, Gil M, Dufayard JF, Dessimoz C, Gascuel O.

Syst Biol. 2011 Oct;60(5):685-99. doi: 10.1093/sysbio/syr041. Epub 2011 May 3.

PMID:
21540409
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O.

Syst Biol. 2010 May;59(3):307-21. doi: 10.1093/sysbio/syq010. Epub 2010 Mar 29.

PMID:
20525638
[PubMed - indexed for MEDLINE]
19.

Selenium supplementation at low doses contributes to the antioxidant status in Trichinella spiralis-infected rats.

Gabrashanska M, Teodorova SE, Petkova S, Mihov L, Anisimova M, Ivanov D.

Parasitol Res. 2010 Feb;106(3):561-70. doi: 10.1007/s00436-009-1695-3.

PMID:
20054563
[PubMed - indexed for MEDLINE]
20.

Investigating protein-coding sequence evolution with probabilistic codon substitution models.

Anisimova M, Kosiol C.

Mol Biol Evol. 2009 Feb;26(2):255-71. doi: 10.1093/molbev/msn232. Epub 2008 Oct 14.

PMID:
18922761
[PubMed - indexed for MEDLINE]
Free Article

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