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Results: 1 to 20 of 31

1.

A linear-time algorithm for Gaussian and non-Gaussian trait evolution models.

Ho Ls, Ané C.

Syst Biol. 2014 May;63(3):397-408. doi: 10.1093/sysbio/syu005. Epub 2014 Feb 4.

PMID:
24500037
[PubMed - indexed for MEDLINE]
2.

Computing the joint distribution of tree shape and tree distance for gene tree inference and recombination detection.

Chung Y, Perna NT, Ané C.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep-Oct;10(5):1263-74. doi: 10.1109/TCBB.2013.109.

PMID:
24384712
[PubMed - indexed for MEDLINE]
3.

Detecting and locating whole genome duplications on a phylogeny: a probabilistic approach.

Rabier CE, Ta T, Ané C.

Mol Biol Evol. 2014 Mar;31(3):750-62. doi: 10.1093/molbev/mst263. Epub 2013 Dec 19.

PMID:
24361993
[PubMed - in process]
4.

Using HSV-1 genome phylogenetics to track past human migrations.

Kolb AW, Ané C, Brandt CR.

PLoS One. 2013 Oct 16;8(10):e76267. doi: 10.1371/journal.pone.0076267. eCollection 2013.

PMID:
24146849
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The evolution of hybrid incompatibilities along a phylogeny.

Wang RJ, Ané C, Payseur BA.

Evolution. 2013 Oct;67(10):2905-22. doi: 10.1111/evo.12173. Epub 2013 Jun 20.

PMID:
24094342
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Computing the Joint Distribution of Tree Shape and Tree Distance for Gene Tree Inference and Recombination Detection.

Chung Y, Perna NT, Ané C.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep 13. [Epub ahead of print]

PMID:
24042552
[PubMed - as supplied by publisher]
7.

Locating evolutionary precursors on a phylogenetic tree.

Marazzi B, Ané C, Simon MF, Delgado-Salinas A, Luckow M, Sanderson MJ.

Evolution. 2012 Dec;66(12):3918-30. doi: 10.1111/j.1558-5646.2012.01720.x. Epub 2012 Aug 6.

PMID:
23206146
[PubMed - indexed for MEDLINE]
8.

Growth and survival parameter estimates and relation to RpoS levels in serotype O157:H7 and non-O157 Shiga toxin-producing Escherichia coli.

Mand TD, Döpfer D, Ingham B, Ané C, Kaspar CW.

J Appl Microbiol. 2013 Jan;114(1):242-55. doi: 10.1111/jam.12021. Epub 2012 Oct 19.

PMID:
22998674
[PubMed - indexed for MEDLINE]
9.

Mapping quantitative trait loci onto a phylogenetic tree.

Broman KW, Kim S, Sen S, Ané C, Payseur BA.

Genetics. 2012 Sep;192(1):267-79. doi: 10.1534/genetics.112.142448. Epub 2012 Jun 28.

PMID:
22745229
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota).

Cai D, Rodríguez F, Teng Y, Ané C, Bonierbale M, Mueller LA, Spooner DM.

BMC Evol Biol. 2012 May 24;12:70. doi: 10.1186/1471-2148-12-70.

PMID:
22624678
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Comparison of bulk-tank standard plate count and somatic cell count for Wisconsin dairy farms in three size categories.

Ingham SC, Hu Y, Ané C.

J Dairy Sci. 2011 Aug;94(8):4237-41. doi: 10.3168/jds.2011-4310. Erratum in: J Dairy Sci. 2011 Oct;94(10):5247.

PMID:
21787961
[PubMed - indexed for MEDLINE]
12.

Traumatic intrapericardial diaphragmatic hernia.

Joyeux F, Canaud L, Berthet JP, Ané CM.

Eur J Cardiothorac Surg. 2011 Jul;40(1):e69. doi: 10.1016/j.ejcts.2011.02.016. Epub 2011 Mar 21. No abstract available.

PMID:
21420875
[PubMed - indexed for MEDLINE]
13.

Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.

Chung Y, Ané C.

Syst Biol. 2011 May;60(3):261-75. doi: 10.1093/sysbio/syr003. Epub 2011 Mar 2.

PMID:
21368324
[PubMed - indexed for MEDLINE]
14.

Detecting phylogenetic breakpoints and discordance from genome-wide alignments for species tree reconstruction.

Ané C.

Genome Biol Evol. 2011;3:246-58. doi: 10.1093/gbe/evr013. Epub 2011 Feb 28.

PMID:
21362638
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The iPlant Collaborative: Cyberinfrastructure for Plant Biology.

Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, Kubach A, Narro M, Hopkins N, Micklos D, Hilgert U, Gonzales M, Jordan C, Skidmore E, Dooley R, Cazes J, McLay R, Lu Z, Pasternak S, Koesterke L, Piel WH, Grene R, Noutsos C, Gendler K, Feng X, Tang C, Lent M, Kim SJ, Kvilekval K, Manjunath BS, Tannen V, Stamatakis A, Sanderson M, Welch SM, Cranston KA, Soltis P, Soltis D, O'Meara B, Ane C, Brutnell T, Kleibenstein DJ, White JW, Leebens-Mack J, Donoghue MJ, Spalding EP, Vision TJ, Myers CR, Lowenthal D, Enquist BJ, Boyle B, Akoglu A, Andrews G, Ram S, Ware D, Stein L, Stanzione D.

Front Plant Sci. 2011 Jul 25;2:34. doi: 10.3389/fpls.2011.00034. eCollection 2011.

PMID:
22645531
[PubMed]
Free PMC Article
16.

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.

Larget BR, Kotha SK, Dewey CN, Ané C.

Bioinformatics. 2010 Nov 15;26(22):2910-1. doi: 10.1093/bioinformatics/btq539. Epub 2010 Sep 21.

PMID:
20861028
[PubMed - indexed for MEDLINE]
Free Article
17.

Predicting growth-no growth of Listeria monocytogenes on vacuum-packaged ready-to-eat meats.

Ingham SC, Borneman DL, Ané C, Ingham BH.

J Food Prot. 2010 Apr;73(4):708-14.

PMID:
20377960
[PubMed - indexed for MEDLINE]
18.

Fine-scale phylogenetic discordance across the house mouse genome.

White MA, Ané C, Dewey CN, Larget BR, Payseur BA.

PLoS Genet. 2009 Nov;5(11):e1000729. doi: 10.1371/journal.pgen.1000729. Epub 2009 Nov 20.

PMID:
19936022
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Do potatoes and tomatoes have a single evolutionary history, and what proportion of the genome supports this history?

Rodriguez F, Wu F, Ané C, Tanksley S, Spooner DM.

BMC Evol Biol. 2009 Aug 7;9:191. doi: 10.1186/1471-2148-9-191.

PMID:
19664206
[PubMed - indexed for MEDLINE]
Free PMC Article

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