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Results: 1 to 20 of 101

1.

The Architecture of a Scrambled Genome Reveals Massive Levels of Genomic Rearrangement during Development.

Chen X, Bracht JR, Goldman AD, Dolzhenko E, Clay DM, Swart EC, Perlman DH, Doak TG, Stuart A, Amemiya CT, Sebra RP, Landweber LF.

Cell. 2014 Aug 28;158(5):1187-98. doi: 10.1016/j.cell.2014.07.034.

PMID:
25171416
[PubMed - in process]
2.

The coelacanth and its genome.

Amemiya CT, Dorrington R, Meyer A.

J Exp Zool B Mol Dev Evol. 2014 Sep;322(6):317-21. doi: 10.1002/jez.b.22583. Epub 2014 Jul 25. No abstract available.

PMID:
25059403
[PubMed - in process]
3.

Genome complexity in the coelacanth is reflected in its adaptive immune system.

Saha NR, Ota T, Litman GW, Hansen J, Parra Z, Hsu E, Buonocore F, Canapa A, Cheng JF, Amemiya CT.

J Exp Zool B Mol Dev Evol. 2014 Sep;322(6):438-63. doi: 10.1002/jez.b.22558. Epub 2014 Jan 24.

PMID:
24464682
[PubMed - in process]
4.

Coelacanths.

Robinson M, Amemiya CT.

Curr Biol. 2014 Jan 20;24(2):R62-3. doi: 10.1016/j.cub.2013.10.027. No abstract available.

PMID:
24456974
[PubMed - indexed for MEDLINE]
5.

Atypical RNAs in the coelacanth transcriptome.

Nitsche A, Doose G, Tafer H, Robinson M, Saha NR, Gerdol M, Canapa A, Hoffmann S, Amemiya CT, Stadler PF.

J Exp Zool B Mol Dev Evol. 2014 Sep;322(6):342-51. doi: 10.1002/jez.b.22542. Epub 2013 Oct 30.

PMID:
24174405
[PubMed - in process]
6.

Francis (Frank) Hugh Ruddle (1929-2013).

Amemiya CT, Wagner GP.

J Exp Zool B Mol Dev Evol. 2013 Jul;320(5):273-5. doi: 10.1002/jez.b.22509. Epub 2013 May 6. No abstract available.

PMID:
23650107
[PubMed - indexed for MEDLINE]
7.

The African coelacanth genome provides insights into tetrapod evolution.

Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, Gerdol M, Aken B, Biscotti MA, Barucca M, Baurain D, Berlin AM, Blatch GL, Buonocore F, Burmester T, Campbell MS, Canapa A, Cannon JP, Christoffels A, De Moro G, Edkins AL, Fan L, Fausto AM, Feiner N, Forconi M, Gamieldien J, Gnerre S, Gnirke A, Goldstone JV, Haerty W, Hahn ME, Hesse U, Hoffmann S, Johnson J, Karchner SI, Kuraku S, Lara M, Levin JZ, Litman GW, Mauceli E, Miyake T, Mueller MG, Nelson DR, Nitsche A, Olmo E, Ota T, Pallavicini A, Panji S, Picone B, Ponting CP, Prohaska SJ, Przybylski D, Saha NR, Ravi V, Ribeiro FJ, Sauka-Spengler T, Scapigliati G, Searle SM, Sharpe T, Simakov O, Stadler PF, Stegeman JJ, Sumiyama K, Tabbaa D, Tafer H, Turner-Maier J, van Heusden P, White S, Williams L, Yandell M, Brinkmann H, Volff JN, Tabin CJ, Shubin N, Schartl M, Jaffe DB, Postlethwait JH, Venkatesh B, Di Palma F, Lander ES, Meyer A, Lindblad-Toh K.

Nature. 2013 Apr 18;496(7445):311-6. doi: 10.1038/nature12027.

PMID:
23598338
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.

Genome Biol. 2013 Mar 28;14(3):R28. doi: 10.1186/gb-2013-14-3-r28.

PMID:
23537068
[PubMed - in process]
Free PMC Article
9.

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution.

Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, Cook M, Krumlauf R, Wiedemann LM, Sower SA, Decatur WA, Hall JA, Amemiya CT, Saha NR, Buckley KM, Rast JP, Das S, Hirano M, McCurley N, Guo P, Rohner N, Tabin CJ, Piccinelli P, Elgar G, Ruffier M, Aken BL, Searle SM, Muffato M, Pignatelli M, Herrero J, Jones M, Brown CT, Chung-Davidson YW, Nanlohy KG, Libants SV, Yeh CY, McCauley DW, Langeland JA, Pancer Z, Fritzsch B, de Jong PJ, Zhu B, Fulton LL, Theising B, Flicek P, Bronner ME, Warren WC, Clifton SW, Wilson RK, Li W.

Nat Genet. 2013 Apr;45(4):415-21, 421e1-2. doi: 10.1038/ng.2568. Epub 2013 Feb 24.

PMID:
23435085
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Theria-specific homeodomain and cis-regulatory element evolution of the Dlx3-4 bigene cluster in 12 different mammalian species.

Sumiyama K, Miyake T, Grimwood J, Stuart A, Dickson M, Schmutz J, Ruddle FH, Myers RM, Amemiya CT.

J Exp Zool B Mol Dev Evol. 2012 Dec;318(8):639-50. doi: 10.1002/jez.b.22469. Epub 2012 Sep 5.

PMID:
22951979
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

An independent genome duplication inferred from Hox paralogs in the American paddlefish--a representative basal ray-finned fish and important comparative reference.

Crow KD, Smith CD, Cheng JF, Wagner GP, Amemiya CT.

Genome Biol Evol. 2012;4(9):937-53. doi: 10.1093/gbe/evs067. Epub 2012 Jul 31.

PMID:
22851613
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genetic consequences of programmed genome rearrangement.

Smith JJ, Baker C, Eichler EE, Amemiya CT.

Curr Biol. 2012 Aug 21;22(16):1524-9. doi: 10.1016/j.cub.2012.06.028. Epub 2012 Jul 19.

PMID:
22818913
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Antigen-presenting genes and genomic copy number variations in the Tasmanian devil MHC.

Cheng Y, Stuart A, Morris K, Taylor R, Siddle H, Deakin J, Jones M, Amemiya CT, Belov K.

BMC Genomics. 2012 Mar 12;13:87. doi: 10.1186/1471-2164-13-87.

PMID:
22404855
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genomic restructuring in the Tasmanian devil facial tumour: chromosome painting and gene mapping provide clues to evolution of a transmissible tumour.

Deakin JE, Bender HS, Pearse AM, Rens W, O'Brien PC, Ferguson-Smith MA, Cheng Y, Morris K, Taylor R, Stuart A, Belov K, Amemiya CT, Murchison EP, Papenfuss AT, Graves JA.

PLoS Genet. 2012;8(2):e1002483. doi: 10.1371/journal.pgen.1002483. Epub 2012 Feb 16.

PMID:
22359511
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome.

Smith JJ, Sumiyama K, Amemiya CT.

Mol Biol Evol. 2012 Mar;29(3):985-93. doi: 10.1093/molbev/msr267. Epub 2011 Oct 31.

PMID:
22045999
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Hox clusters of the bichir (Actinopterygii, Polypterus senegalus) highlight unique patterns of sequence evolution in gnathostome phylogeny.

Raincrow JD, Dewar K, Stocsits C, Prohaska SJ, Amemiya CT, Stadler PF, Chiu CH.

J Exp Zool B Mol Dev Evol. 2011 Sep 15;316(6):451-64. doi: 10.1002/jez.b.21420. Epub 2011 Jun 17.

PMID:
21688387
[PubMed - indexed for MEDLINE]
17.

Genome biology of the cyclostomes and insights into the evolutionary biology of vertebrate genomes.

Smith JJ, Saha NR, Amemiya CT.

Integr Comp Biol. 2010 Jul;50(1):130-7. doi: 10.1093/icb/icq023. Epub 2010 Apr 19.

PMID:
21558194
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comparative analyses of vertebrate posterior HoxD clusters reveal atypical cluster architecture in the caecilian Typhlonectes natans.

Mannaert A, Amemiya CT, Bossuyt F.

BMC Genomics. 2010 Nov 24;11:658. doi: 10.1186/1471-2164-11-658.

PMID:
21106068
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Antarctic notothenioid fishes: genomic resources and strategies for analyzing an adaptive radiation.

Detrich HW 3rd, Amemiya CT.

Integr Comp Biol. 2010 Dec;50(6):1009-17. doi: 10.1093/icb/icq071. Epub 2010 Jul 12.

PMID:
21082069
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Conservation of shh cis-regulatory architecture of the coelacanth is consistent with its ancestral phylogenetic position.

Lang M, Hadzhiev Y, Siegel N, Amemiya CT, Parada C, Strähle U, Becker MB, Müller F, Meyer A.

Evodevo. 2010 Nov 3;1(1):11. doi: 10.1186/2041-9139-1-11.

PMID:
21047394
[PubMed]
Free PMC Article

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