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Digital Dermatitis in Cattle: Current Bacterial and Immunological Findings.

Wilson-Welder JH, Alt DP, Nally JE.

Animals (Basel). 2015 Nov 11;5(4):1114-35. doi: 10.3390/ani5040400. Review.


Draft Genome Sequences of Nine Streptococcus suis Strains Isolated in the United States.

Hau SJ, Bayles DO, Alt DP, Brockmeier SL, Frana TS, Nicholson TL.

Genome Announc. 2015 Nov 5;3(6). pii: e01301-15. doi: 10.1128/genomeA.01301-15.


Complete Genome Sequence of Coriobacteriaceae Strain 68-1-3, a Novel Mucus-Degrading Isolate from the Swine Intestinal Tract.

Looft T, Bayles DO, Alt DP, Stanton TB.

Genome Announc. 2015 Oct 8;3(5). pii: e01143-15. doi: 10.1128/genomeA.01143-15.


Complete Genome Sequence of Leptospira interrogans Serovar Bratislava, Strain PigK151.

Alt DP, Wilson-Welder JH, Bayles DO, Cameron C, Adler B, Bulach DM, Seemann T, Lehane MJ, Haines LR, Darby AC, Hall N, Radford AD, Zuerner RL.

Genome Announc. 2015 Jun 25;3(3). pii: e00678-15. doi: 10.1128/genomeA.00678-15.


Identification of several clades of novel single-stranded circular DNA viruses with conserved stem-loop structures in pig feces.

Cheung AK, Ng TF, Lager KM, Alt DP, Delwart E, Pogranichniy RM.

Arch Virol. 2015 Jan;160(1):353-8. doi: 10.1007/s00705-014-2234-9. Epub 2014 Sep 24.


Development of a real-time PCR for the detection of pathogenic Leptospira spp. in California sea lions.

Wu Q, Prager KC, Goldstein T, Alt DP, Galloway RL, Zuerner RL, Lloyd-Smith JO, Schwacke L.

Dis Aquat Organ. 2014 Aug 11;110(3):165-72. doi: 10.3354/dao02752.


Carbadox has both temporary and lasting effects on the swine gut microbiota.

Looft T, Allen HK, Casey TA, Alt DP, Stanton TB.

Front Microbiol. 2014 Jun 10;5:276. doi: 10.3389/fmicb.2014.00276. eCollection 2014.


Identification of a novel single-stranded circular DNA virus in pig feces.

Cheung AK, Ng TF, Lager KM, Alt DP, Delwart EL, Pogranichniy RM.

Genome Announc. 2014 May 1;2(2). pii: e00347-14. doi: 10.1128/genomeA.00347-14.


Unique circovirus-like genome detected in pig feces.

Cheung AK, Ng TF, Lager KM, Alt DP, Delwart EL, Pogranichniy RM.

Genome Announc. 2014 Apr 10;2(2). pii: e00251-14. doi: 10.1128/genomeA.00251-14.


Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations.

Looft T, Allen HK, Cantarel BL, Levine UY, Bayles DO, Alt DP, Henrissat B, Stanton TB.

ISME J. 2014 Aug;8(8):1566-76. doi: 10.1038/ismej.2014.12. Epub 2014 Feb 13.


Biochemical and molecular characterization of Treponema phagedenis-like spirochetes isolated from a bovine digital dermatitis lesion.

Wilson-Welder JH, Elliott MK, Zuerner RL, Bayles DO, Alt DP, Stanton TB.

BMC Microbiol. 2013 Dec 5;13:280. doi: 10.1186/1471-2180-13-280.


Expansion of the in vitro assay for Leptospira potency testing to other serovars: case study with Leptospira Hardjo.

Alt DP, Wilson-Welder J.

Biologicals. 2013 Sep;41(5):323-4. doi: 10.1016/j.biologicals.2013.06.003. Epub 2013 Jul 6. Review.


A divergent clade of circular single-stranded DNA viruses from pig feces.

Cheung AK, Ng TF, Lager KM, Bayles DO, Alt DP, Delwart EL, Pogranichniy RM, Kehrli ME Jr.

Arch Virol. 2013 Oct;158(10):2157-62. doi: 10.1007/s00705-013-1701-z. Epub 2013 Apr 24.


Asymptomatic and chronic carriage of Leptospira interrogans serovar Pomona in California sea lions (Zalophus californianus).

Prager KC, Greig DJ, Alt DP, Galloway RL, Hornsby RL, Palmer LJ, Soper J, Wu Q, Zuerner RL, Gulland FM, Lloyd-Smith JO.

Vet Microbiol. 2013 May 31;164(1-2):177-83. doi: 10.1016/j.vetmic.2013.01.032. Epub 2013 Feb 4.


Diversity of viruses detected by deep sequencing in pigs from a common background.

Lager KM, Ng TF, Bayles DO, Alt DP, Delwart EL, Cheung AK.

J Vet Diagn Invest. 2012 Nov;24(6):1177-9. doi: 10.1177/1040638712463212. Epub 2012 Oct 10.


Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association.

Bannantine JP, Wu CW, Hsu C, Zhou S, Schwartz DC, Bayles DO, Paustian ML, Alt DP, Sreevatsan S, Kapur V, Talaat AM.

BMC Genomics. 2012 Mar 12;13:89. doi: 10.1186/1471-2164-13-89.


In-feed antibiotic effects on the swine intestinal microbiome.

Looft T, Johnson TA, Allen HK, Bayles DO, Alt DP, Stedtfeld RD, Sul WJ, Stedtfeld TM, Chai B, Cole JR, Hashsham SA, Tiedje JM, Stanton TB.

Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1691-6. doi: 10.1073/pnas.1120238109. Epub 2012 Jan 17.


Large scale parallel pyrosequencing technology: PRRSV strain VR-2332 nsp2 deletion mutant stability in swine.

Guo B, Vorwald AC, Alt DP, Lager KM, Bayles DO, Faaberg KS.

Virus Res. 2011 Nov;161(2):162-9. doi: 10.1016/j.virusres.2011.07.018. Epub 2011 Aug 4.


Development of chronic and acute golden Syrian hamster infection models with Leptospira borgpetersenii serovar Hardjo.

Zuerner RL, Alt DP, Palmer MV.

Vet Pathol. 2012 Mar;49(2):403-11. doi: 10.1177/0300985811409252. Epub 2011 Jun 13.


A Leptospira borgpetersenii serovar Hardjo vaccine induces a Th1 response, activates NK cells, and reduces renal colonization.

Zuerner RL, Alt DP, Palmer MV, Thacker TC, Olsen SC.

Clin Vaccine Immunol. 2011 Apr;18(4):684-91. doi: 10.1128/CVI.00288-10. Epub 2011 Feb 2.

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