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Items: 1 to 20 of 312


Geometry of the Gene Expression Space of Individual Cells.

Korem Y, Szekely P, Hart Y, Sheftel H, Hausser J, Mayo A, Rothenberg ME, Kalisky T, Alon U.

PLoS Comput Biol. 2015 Jul 10;11(7):e1004224. doi: 10.1371/journal.pcbi.1004224. eCollection 2015 Jul.


Evolutionary tradeoffs, Pareto optimality and the morphology of ammonite shells.

Tendler A, Mayo A, Alon U.

BMC Syst Biol. 2015 Mar 7;9:12. doi: 10.1186/s12918-015-0149-z.


Evolution of bow-tie architectures in biology.

Friedlander T, Mayo AE, Tlusty T, Alon U.

PLoS Comput Biol. 2015 Mar 23;11(3):e1004055. doi: 10.1371/journal.pcbi.1004055. eCollection 2015 Mar.


Corrective jitter motion shows similar individual frequencies for the arm and the finger.

Noy L, Alon U, Friedman J.

Exp Brain Res. 2015 Apr;233(4):1307-20. doi: 10.1007/s00221-015-4204-1. Epub 2015 Jan 29.


Inferring biological tasks using Pareto analysis of high-dimensional data.

Hart Y, Sheftel H, Hausser J, Szekely P, Ben-Moshe NB, Korem Y, Tendler A, Mayo AE, Alon U.

Nat Methods. 2015 Mar;12(3):233-5, 3 p following 235. doi: 10.1038/nmeth.3254. Epub 2015 Jan 26.


Hierarchy of non-glucose sugars in Escherichia coli.

Aidelberg G, Towbin BD, Rothschild D, Dekel E, Bren A, Alon U.

BMC Syst Biol. 2014 Dec 24;8:133. doi: 10.1186/s12918-014-0133-z.


Cyclooxygenase-2, prostaglandin E2, and prostanoid receptor EP2 in fluid flow shear stress-mediated injury in the solitary kidney.

Srivastava T, Alon US, Cudmore PA, Tarakji B, Kats A, Garola RE, Duncan RS, McCarthy ET, Sharma R, Johnson ML, Bonewald LF, El-Meanawy A, Savin VJ, Sharma M.

Am J Physiol Renal Physiol. 2014 Dec 15;307(12):F1323-33. doi: 10.1152/ajprenal.00335.2014. Epub 2014 Sep 18.


Paradoxical signaling by a secreted molecule leads to homeostasis of cell levels.

Hart Y, Reich-Zeliger S, Antebi YE, Zaretsky I, Mayo AE, Alon U, Friedman N.

Cell. 2014 Aug 28;158(5):1022-32. doi: 10.1016/j.cell.2014.07.033.


Logarithmic and power law input-output relations in sensory systems with fold-change detection.

Adler M, Mayo A, Alon U.

PLoS Comput Biol. 2014 Aug 14;10(8):e1003781. doi: 10.1371/journal.pcbi.1003781. eCollection 2014 Aug.


Linear superposition and prediction of bacterial promoter activity dynamics in complex conditions.

Rothschild D, Dekel E, Hausser J, Bren A, Aidelberg G, Szekely P, Alon U.

PLoS Comput Biol. 2014 May 8;10(5):e1003602. doi: 10.1371/journal.pcbi.1003602. eCollection 2014 May.


A fundamental trade-off in covalent switching and its circumvention by enzyme bifunctionality in glucose homeostasis.

Dasgupta T, Croll DH, Owen JA, Vander Heiden MG, Locasale JW, Alon U, Cantley LC, Gunawardena J.

J Biol Chem. 2014 May 9;289(19):13010-25. doi: 10.1074/jbc.M113.546515. Epub 2014 Mar 14.


Noise genetics: inferring protein function by correlating phenotype with protein levels and localization in individual human cells.

Farkash-Amar S, Zimmer A, Eden E, Cohen A, Geva-Zatorsky N, Cohen L, Milo R, Sigal A, Danon T, Alon U.

PLoS Genet. 2014 Mar 6;10(3):e1004176. doi: 10.1371/journal.pgen.1004176. eCollection 2014 Mar.


Individuality and togetherness in joint improvised motion.

Hart Y, Noy L, Feniger-Schaal R, Mayo AE, Alon U.

PLoS One. 2014 Feb 12;9(2):e87213. doi: 10.1371/journal.pone.0087213. eCollection 2014.


Promoter activity dynamics in the lag phase of Escherichia coli.

Madar D, Dekel E, Bren A, Zimmer A, Porat Z, Alon U.

BMC Syst Biol. 2013 Dec 30;7:136. doi: 10.1186/1752-0509-7-136.


Promoters maintain their relative activity levels under different growth conditions.

Keren L, Zackay O, Lotan-Pompan M, Barenholz U, Dekel E, Sasson V, Aidelberg G, Bren A, Zeevi D, Weinberger A, Alon U, Milo R, Segal E.

Mol Syst Biol. 2013 Oct 29;9:701. doi: 10.1038/msb.2013.59.


Fluid flow shear stress over podocytes is increased in the solitary kidney.

Srivastava T, Celsi GE, Sharma M, Dai H, McCarthy ET, Ruiz M, Cudmore PA, Alon US, Sharma R, Savin VA.

Nephrol Dial Transplant. 2014 Jan;29(1):65-72. doi: 10.1093/ndt/gft387. Epub 2013 Oct 28.


Developmental bias in the evolution of phalanges.

Kavanagh KD, Shoval O, Winslow BB, Alon U, Leary BP, Kan A, Tabin CJ.

Proc Natl Acad Sci U S A. 2013 Nov 5;110(45):18190-5. doi: 10.1073/pnas.1315213110. Epub 2013 Oct 22.


Response to comment on "Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space".

Shoval O, Sheftel H, Shinar G, Hart Y, Ramote O, Mayo A, Dekel E, Kavanagh K, Alon U.

Science. 2013 Feb 15;339(6121):757. doi: 10.1126/science.1228921.


Invited reply to "Treatment of pediatric hypomagnesaemia: a fast and safe way" (PBC-13-0655) by Ismail El-Beshlawi.

Alon US, Kaplinsky C.

Pediatr Blood Cancer. 2014 Jul;61(7):1157. doi: 10.1002/pbc.24748. Epub 2013 Aug 23. No abstract available.


Evolutionary tradeoffs between economy and effectiveness in biological homeostasis systems.

Szekely P, Sheftel H, Mayo A, Alon U.

PLoS Comput Biol. 2013;9(8):e1003163. doi: 10.1371/journal.pcbi.1003163. Epub 2013 Aug 8.

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