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Molecular circuitry of stem cell fate in skeletal muscle regeneration, ageing and disease.

Almada AE, Wagers AJ.

Nat Rev Mol Cell Biol. 2016 May;17(5):267-79. doi: 10.1038/nrm.2016.7. Epub 2016 Mar 9.


FOXP3+ T Cells Recruited to Sites of Sterile Skeletal Muscle Injury Regulate the Fate of Satellite Cells and Guide Effective Tissue Regeneration.

Castiglioni A, Corna G, Rigamonti E, Basso V, Vezzoli M, Monno A, Almada AE, Mondino A, Wagers AJ, Manfredi AA, Rovere-Querini P.

PLoS One. 2015 Jun 3;10(6):e0128094. doi: 10.1371/journal.pone.0128094. eCollection 2015. Erratum in: PLoS One. 2015;10(7):e0133101.


Promoter directionality is controlled by U1 snRNP and polyadenylation signals.

Almada AE, Wu X, Kriz AJ, Burge CB, Sharp PA.

Nature. 2013 Jul 18;499(7458):360-3. doi: 10.1038/nature12349. Epub 2013 Jun 23.


Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells.

Sigova AA, Mullen AC, Molinie B, Gupta S, Orlando DA, Guenther MG, Almada AE, Lin C, Sharp PA, Giallourakis CC, Young RA.

Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):2876-81. doi: 10.1073/pnas.1221904110. Epub 2013 Feb 4.


Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome.

Flynn RA, Almada AE, Zamudio JR, Sharp PA.

Proc Natl Acad Sci U S A. 2011 Jun 28;108(26):10460-5. doi: 10.1073/pnas.1106630108. Epub 2011 Jun 13.


ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family.

Roca AI, Almada AE, Abajian AC.

BMC Bioinformatics. 2008 Dec 22;9:554. doi: 10.1186/1471-2105-9-554.

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