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Transcript level coordination of carbon pathways during silicon starvation-induced lipid accumulation in the diatom Thalassiosira pseudonana.

Smith SR, Glé C, Abbriano RM, Traller JC, Davis A, Trentacoste E, Vernet M, Allen AE, Hildebrand M.

New Phytol. 2016 Feb 4. doi: 10.1111/nph.13843. [Epub ahead of print]


Visual input to the mouse lateral posterior and posterior thalamic nuclei: Photoreceptive origins and retinotopic order.

Allen AE, Procyk CA, Howarth M, Walmsley L, Brown TM.

J Physiol. 2016 Feb 4. doi: 10.1113/JP271707. [Epub ahead of print]


Using Silent Substitution to Track the Mesopic Transition From Rod- to Cone-Based Vision in Mice.

Allen AE, Lucas RJ.

Invest Ophthalmol Vis Sci. 2016 Jan 1;57(1):276-87. doi: 10.1167/iovs.15-18197.


The contribution of inner and outer retinal photoreceptors to infra-slow oscillations in the rat olivary pretectal nucleus.

Orlowska-Feuer P, Allen AE, Storchi R, Szkudlarek HJ, Lewandowski MH.

Eur J Neurosci. 2016 Jan 25. doi: 10.1111/ejn.13184. [Epub ahead of print]


Successful treatment of severe hypokalemia in a dog with acute kidney injury caused by leptospirosis.

Allen AE, Buckley GJ, Schaer M.

J Vet Emerg Crit Care (San Antonio). 2015 Dec 4. doi: 10.1111/vec.12416. [Epub ahead of print]


Hepatocyte Growth Factor from a Clinical Perspective: A Pancreatic Cancer Challenge.

Rizwani W, Allen AE, Trevino JG.

Cancers (Basel). 2015 Sep 3;7(3):1785-805. doi: 10.3390/cancers7030861. Review.


Restoration of Vision with Ectopic Expression of Human Rod Opsin.

Cehajic-Kapetanovic J, Eleftheriou C, Allen AE, Milosavljevic N, Pienaar A, Bedford R, Davis KE, Bishop PN, Lucas RJ.

Curr Biol. 2015 Aug 17;25(16):2111-22. doi: 10.1016/j.cub.2015.07.029. Epub 2015 Jul 30.


Phytoplankton-bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge.

Bertrand EM, McCrow JP, Moustafa A, Zheng H, McQuaid JB, Delmont TO, Post AF, Sipler RE, Spackeen JL, Xu K, Bronk DA, Hutchins DA, Allen AE.

Proc Natl Acad Sci U S A. 2015 Aug 11;112(32):9938-43. doi: 10.1073/pnas.1501615112. Epub 2015 Jul 28.


Spatial receptive fields in the retina and dorsal lateral geniculate nucleus of mice lacking rods and cones.

Procyk CA, Eleftheriou CG, Storchi R, Allen AE, Milosavljevic N, Brown TM, Lucas RJ.

J Neurophysiol. 2015 Aug;114(2):1321-30. doi: 10.1152/jn.00368.2015. Epub 2015 Jun 17.


An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum.

Veluchamy A, Rastogi A, Lin X, Lombard B, Murik O, Thomas Y, Dingli F, Rivarola M, Ott S, Liu X, Sun Y, Rabinowicz PD, McCarthy J, Allen AE, Loew D, Bowler C, Tirichine L.

Genome Biol. 2015 May 20;16:102. doi: 10.1186/s13059-015-0671-8.


Designer diatom episomes delivered by bacterial conjugation.

Karas BJ, Diner RE, Lefebvre SC, McQuaid J, Phillips AP, Noddings CM, Brunson JK, Valas RE, Deerinck TJ, Jablanovic J, Gillard JT, Beeri K, Ellisman MH, Glass JI, Hutchison CA 3rd, Smith HO, Venter JC, Allen AE, Dupont CL, Weyman PD.

Nat Commun. 2015 Apr 21;6:6925. doi: 10.1038/ncomms7925.


Melanopsin-derived visual responses under light adapted conditions in the mouse dLGN.

Davis KE, Eleftheriou CG, Allen AE, Procyk CA, Lucas RJ.

PLoS One. 2015 Mar 30;10(3):e0123424. doi: 10.1371/journal.pone.0123424. eCollection 2015.


A novel protein, ubiquitous in marine phytoplankton, concentrates iron at the cell surface and facilitates uptake.

Morrissey J, Sutak R, Paz-Yepes J, Tanaka A, Moustafa A, Veluchamy A, Thomas Y, Botebol H, Bouget FY, McQuaid JB, Tirichine L, Allen AE, Lesuisse E, Bowler C.

Curr Biol. 2015 Feb 2;25(3):364-71. doi: 10.1016/j.cub.2014.12.004. Epub 2014 Dec 31.


Retinal output changes qualitatively with every change in ambient illuminance.

Tikidji-Hamburyan A, Reinhard K, Seitter H, Hovhannisyan A, Procyk CA, Allen AE, Schenk M, Lucas RJ, Münch TA.

Nat Neurosci. 2015 Jan;18(1):66-74. doi: 10.1038/nn.3891. Epub 2014 Dec 8.


Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities.

Dupont CL, McCrow JP, Valas R, Moustafa A, Walworth N, Goodenough U, Roth R, Hogle SL, Bai J, Johnson ZI, Mann E, Palenik B, Barbeau KA, Venter JC, Allen AE.

ISME J. 2015 May;9(5):1076-92. doi: 10.1038/ismej.2014.198. Epub 2014 Oct 21.


Melanopsin-driven light adaptation in mouse vision.

Allen AE, Storchi R, Martial FP, Petersen RS, Montemurro MA, Brown TM, Lucas RJ.

Curr Biol. 2014 Nov 3;24(21):2481-90. doi: 10.1016/j.cub.2014.09.015. Epub 2014 Oct 9.


Inactivation of Phaeodactylum tricornutum urease gene using transcription activator-like effector nuclease-based targeted mutagenesis.

Weyman PD, Beeri K, Lefebvre SC, Rivera J, McCarthy JK, Heuberger AL, Peers G, Allen AE, Dupont CL.

Plant Biotechnol J. 2015 May;13(4):460-70. doi: 10.1111/pbi.12254. Epub 2014 Oct 10.


Functional tradeoffs underpin salinity-driven divergence in microbial community composition.

Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, Andersson AF, Tenney A, Lundin D, Tovchigrechko A, Nylander JA, Brami D, Badger JH, Allen AE, Rusch DB, Hoffman J, Norrby E, Friedman R, Pinhassi J, Venter JC, Bergman B.

PLoS One. 2014 Feb 27;9(2):e89549. doi: 10.1371/journal.pone.0089549. eCollection 2014.


Lineage specific gene family enrichment at the microscale in marine systems.

Allen AE, Allen LZ, McCrow JP.

Curr Opin Microbiol. 2013 Oct;16(5):605-17. Review.


Assembly of eukaryotic algal chromosomes in yeast.

Karas BJ, Molparia B, Jablanovic J, Hermann WJ, Lin YC, Dupont CL, Tagwerker C, Yonemoto IT, Noskov VN, Chuang RY, Allen AE, Glass JI, Hutchison CA 3rd, Smith HO, Venter JC, Weyman PD.

J Biol Eng. 2013 Dec 10;7(1):30. doi: 10.1186/1754-1611-7-30.

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