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Results: 1 to 20 of 80

1.

An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum.

Veluchamy A, Rastogi A, Lin X, Lombard B, Murik O, Thomas Y, Dingli F, Rivarola M, Ott S, Liu X, Sun Y, Rabinowicz PD, McCarthy J, Allen AE, Loew D, Bowler C, Tirichine L.

Genome Biol. 2015 May 20;16(1):102. [Epub ahead of print]

PMID:
25990474
2.

Designer diatom episomes delivered by bacterial conjugation.

Karas BJ, Diner RE, Lefebvre SC, McQuaid J, Phillips AP, Noddings CM, Brunson JK, Valas RE, Deerinck TJ, Jablanovic J, Gillard JT, Beeri K, Ellisman MH, Glass JI, Hutchison Iii CA, Smith HO, Venter JC, Allen AE, Dupont CL, Weyman PD.

Nat Commun. 2015 Apr 21;6:6925. doi: 10.1038/ncomms7925.

3.

Melanopsin-derived visual responses under light adapted conditions in the mouse dLGN.

Davis KE, Eleftheriou CG, Allen AE, Procyk CA, Lucas RJ.

PLoS One. 2015 Mar 30;10(3):e0123424. doi: 10.1371/journal.pone.0123424. eCollection 2015.

4.

A novel protein, ubiquitous in marine phytoplankton, concentrates iron at the cell surface and facilitates uptake.

Morrissey J, Sutak R, Paz-Yepes J, Tanaka A, Moustafa A, Veluchamy A, Thomas Y, Botebol H, Bouget FY, McQuaid JB, Tirichine L, Allen AE, Lesuisse E, Bowler C.

Curr Biol. 2015 Feb 2;25(3):364-71. doi: 10.1016/j.cub.2014.12.004. Epub 2014 Dec 31.

PMID:
25557662
5.

Retinal output changes qualitatively with every change in ambient illuminance.

Tikidji-Hamburyan A, Reinhard K, Seitter H, Hovhannisyan A, Procyk CA, Allen AE, Schenk M, Lucas RJ, Münch TA.

Nat Neurosci. 2015 Jan;18(1):66-74. doi: 10.1038/nn.3891. Epub 2014 Dec 8.

PMID:
25485757
6.

Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities.

Dupont CL, McCrow JP, Valas R, Moustafa A, Walworth N, Goodenough U, Roth R, Hogle SL, Bai J, Johnson ZI, Mann E, Palenik B, Barbeau KA, Craig Venter J, Allen AE.

ISME J. 2015 May;9(5):1076-92. doi: 10.1038/ismej.2014.198. Epub 2014 Oct 21.

7.

Melanopsin-driven light adaptation in mouse vision.

Allen AE, Storchi R, Martial FP, Petersen RS, Montemurro MA, Brown TM, Lucas RJ.

Curr Biol. 2014 Nov 3;24(21):2481-90. doi: 10.1016/j.cub.2014.09.015. Epub 2014 Oct 9.

8.

Inactivation of Phaeodactylum tricornutum urease gene using transcription activator-like effector nuclease-based targeted mutagenesis.

Weyman PD, Beeri K, Lefebvre SC, Rivera J, McCarthy JK, Heuberger AL, Peers G, Allen AE, Dupont CL.

Plant Biotechnol J. 2015 May;13(4):460-70. doi: 10.1111/pbi.12254. Epub 2014 Oct 10.

PMID:
25302562
9.

Functional tradeoffs underpin salinity-driven divergence in microbial community composition.

Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, Andersson AF, Tenney A, Lundin D, Tovchigrechko A, Nylander JA, Brami D, Badger JH, Allen AE, Rusch DB, Hoffman J, Norrby E, Friedman R, Pinhassi J, Venter JC, Bergman B.

PLoS One. 2014 Feb 27;9(2):e89549. doi: 10.1371/journal.pone.0089549. eCollection 2014.

10.

Lineage specific gene family enrichment at the microscale in marine systems.

Allen AE, Allen LZ, McCrow JP.

Curr Opin Microbiol. 2013 Oct;16(5):605-17. Review.

PMID:
24377115
11.

Assembly of eukaryotic algal chromosomes in yeast.

Karas BJ, Molparia B, Jablanovic J, Hermann WJ, Lin YC, Dupont CL, Tagwerker C, Yonemoto IT, Noskov VN, Chuang RY, Allen AE, Glass JI, Hutchison CA 3rd, Smith HO, Venter JC, Weyman PD.

J Biol Eng. 2013 Dec 10;7(1):30. doi: 10.1186/1754-1611-7-30.

12.

Use of IV lipid emulsion for treatment of ivermectin toxicosis in a cat.

Kidwell JH, Buckley GJ, Allen AE, Bandt C.

J Am Anim Hosp Assoc. 2014 Jan-Feb;50(1):59-61. doi: 10.5326/JAAHA-MS-5951. Epub 2013 Nov 11.

PMID:
24216496
13.

Massive difference in synonymous substitution rates among mitochondrial, plastid, and nuclear genes of Phaeocystis algae.

Smith DR, Arrigo KR, Alderkamp AC, Allen AE.

Mol Phylogenet Evol. 2014 Feb;71:36-40. doi: 10.1016/j.ympev.2013.10.018. Epub 2013 Nov 8.

PMID:
24216019
14.

Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum.

Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O'Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Le Crom S, Farrant GK, Sgro JY, Olson SA, Bondurant SS, Allen AE, Rabinowicz PD, Sussman MR, Bowler C, Tirichine L.

Nat Commun. 2013;4:2091. doi: 10.1038/ncomms3091. Erratum in: Nat Commun. 2014;5:3028. Allen, Andrew [corrected to Allen, Andrew E].

PMID:
23820484
15.

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum.

McLean JS, Lombardo MJ, Badger JH, Edlund A, Novotny M, Yee-Greenbaum J, Vyahhi N, Hall AP, Yang Y, Dupont CL, Ziegler MG, Chitsaz H, Allen AE, Yooseph S, Tesler G, Pevzner PA, Friedman RM, Nealson KH, Venter JC, Lasken RS.

Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):E2390-9. doi: 10.1073/pnas.1219809110. Epub 2013 Jun 10.

16.

Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem.

Smith MW, Zeigler Allen L, Allen AE, Herfort L, Simon HM.

Front Microbiol. 2013 May 30;4:120. doi: 10.3389/fmicb.2013.00120. eCollection 2013.

17.

Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera, across depth and season.

Konotchick T, Dupont CL, Valas RE, Badger JH, Allen AE.

New Phytol. 2013 Apr;198(2):398-407. doi: 10.1111/nph.12160. Epub 2013 Mar 13.

18.

The melanopic sensitivity function accounts for melanopsin-driven responses in mice under diverse lighting conditions.

Brown TM, Allen AE, al-Enezi J, Wynne J, Schlangen L, Hommes V, Lucas RJ.

PLoS One. 2013;8(1):e53583. doi: 10.1371/journal.pone.0053583. Epub 2013 Jan 3.

19.

Dissolved and particulate trace metal micronutrients under the McMurdo Sound seasonal sea ice: basal sea ice communities as a capacitor for iron.

Noble AE, Moran DM, Allen AE, Saito MA.

Front Chem. 2013 Oct 30;1:25. doi: 10.3389/fchem.2013.00025. eCollection 2013.

20.

Influence of vitamin B auxotrophy on nitrogen metabolism in eukaryotic phytoplankton.

Bertrand EM, Allen AE.

Front Microbiol. 2012 Oct 19;3:375. doi: 10.3389/fmicb.2012.00375. eCollection 2012.

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