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Results: 1 to 20 of 72

1.

Functional tradeoffs underpin salinity-driven divergence in microbial community composition.

Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, Andersson AF, Tenney A, Lundin D, Tovchigrechko A, Nylander JA, Brami D, Badger JH, Allen AE, Rusch DB, Hoffman J, Norrby E, Friedman R, Pinhassi J, Venter JC, Bergman B.

PLoS One. 2014 Feb 27;9(2):e89549. doi: 10.1371/journal.pone.0089549. eCollection 2014.

PMID:
24586863
[PubMed - in process]
Free PMC Article
2.

Lineage specific gene family enrichment at the microscale in marine systems.

Allen AE, Allen LZ, McCrow JP.

Curr Opin Microbiol. 2013 Oct;16(5):605-17. Review.

PMID:
24377115
[PubMed - indexed for MEDLINE]
3.

Assembly of eukaryotic algal chromosomes in yeast.

Karas BJ, Molparia B, Jablanovic J, Hermann WJ, Lin YC, Dupont CL, Tagwerker C, Yonemoto IT, Noskov VN, Chuang RY, Allen AE, Glass JI, Hutchison CA 3rd, Smith HO, Venter JC, Weyman PD.

J Biol Eng. 2013 Dec 10;7(1):30. doi: 10.1186/1754-1611-7-30.

PMID:
24325901
[PubMed]
Free PMC Article
4.

Use of IV lipid emulsion for treatment of ivermectin toxicosis in a cat.

Kidwell JH, Buckley GJ, Allen AE, Bandt C.

J Am Anim Hosp Assoc. 2014 Jan-Feb;50(1):59-61. doi: 10.5326/JAAHA-MS-5951. Epub 2013 Nov 11.

PMID:
24216496
[PubMed - in process]
5.

Massive difference in synonymous substitution rates among mitochondrial, plastid, and nuclear genes of Phaeocystis algae.

Smith DR, Arrigo KR, Alderkamp AC, Allen AE.

Mol Phylogenet Evol. 2014 Feb;71:36-40. doi: 10.1016/j.ympev.2013.10.018. Epub 2013 Nov 8.

PMID:
24216019
[PubMed - indexed for MEDLINE]
6.

Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum.

Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O'Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Le Crom S, Farrant GK, Sgro JY, Olson SA, Bondurant SS, Allen AE, Rabinowicz PD, Sussman MR, Bowler C, Tirichine L.

Nat Commun. 2013;4:2091. doi: 10.1038/ncomms3091. Erratum in: Nat Commun. 2014;5:3028. Allen, Andrew [corrected to Allen, Andrew E].

PMID:
23820484
[PubMed - indexed for MEDLINE]
7.

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum.

McLean JS, Lombardo MJ, Badger JH, Edlund A, Novotny M, Yee-Greenbaum J, Vyahhi N, Hall AP, Yang Y, Dupont CL, Ziegler MG, Chitsaz H, Allen AE, Yooseph S, Tesler G, Pevzner PA, Friedman RM, Nealson KH, Venter JC, Lasken RS.

Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):E2390-9. doi: 10.1073/pnas.1219809110. Epub 2013 Jun 10.

PMID:
23754396
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem.

Smith MW, Zeigler Allen L, Allen AE, Herfort L, Simon HM.

Front Microbiol. 2013 May 30;4:120. doi: 10.3389/fmicb.2013.00120. eCollection 2013.

PMID:
23750156
[PubMed]
Free PMC Article
9.

Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera, across depth and season.

Konotchick T, Dupont CL, Valas RE, Badger JH, Allen AE.

New Phytol. 2013 Apr;198(2):398-407. doi: 10.1111/nph.12160. Epub 2013 Mar 13.

PMID:
23488966
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The melanopic sensitivity function accounts for melanopsin-driven responses in mice under diverse lighting conditions.

Brown TM, Allen AE, al-Enezi J, Wynne J, Schlangen L, Hommes V, Lucas RJ.

PLoS One. 2013;8(1):e53583. doi: 10.1371/journal.pone.0053583. Epub 2013 Jan 3.

PMID:
23301090
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Dissolved and particulate trace metal micronutrients under the McMurdo Sound seasonal sea ice: basal sea ice communities as a capacitor for iron.

Noble AE, Moran DM, Allen AE, Saito MA.

Front Chem. 2013 Oct 30;1:25. doi: 10.3389/fchem.2013.00025. eCollection 2013.

PMID:
24790953
[PubMed]
Free PMC Article
12.

Influence of vitamin B auxotrophy on nitrogen metabolism in eukaryotic phytoplankton.

Bertrand EM, Allen AE.

Front Microbiol. 2012 Oct 19;3:375. doi: 10.3389/fmicb.2012.00375. eCollection 2012.

PMID:
23091473
[PubMed]
Free PMC Article
13.

Whole transcriptome analysis of the silicon response of the diatom Thalassiosira pseudonana.

Shrestha RP, Tesson B, Norden-Krichmar T, Federowicz S, Hildebrand M, Allen AE.

BMC Genomics. 2012 Sep 20;13:499. doi: 10.1186/1471-2164-13-499.

PMID:
22994549
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

How rod, cone, and melanopsin photoreceptors come together to enlighten the mammalian circadian clock.

Lucas RJ, Lall GS, Allen AE, Brown TM.

Prog Brain Res. 2012;199:1-18. doi: 10.1016/B978-0-444-59427-3.00001-0. Review.

PMID:
22877656
[PubMed - indexed for MEDLINE]
15.

Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions.

Loper JE, Hassan KA, Mavrodi DV, Davis EW 2nd, Lim CK, Shaffer BT, Elbourne LD, Stockwell VO, Hartney SL, Breakwell K, Henkels MD, Tetu SG, Rangel LI, Kidarsa TA, Wilson NL, van de Mortel JE, Song C, Blumhagen R, Radune D, Hostetler JB, Brinkac LM, Durkin AS, Kluepfel DA, Wechter WP, Anderson AJ, Kim YC, Pierson LS 3rd, Pierson EA, Lindow SE, Kobayashi DY, Raaijmakers JM, Weller DM, Thomashow LS, Allen AE, Paulsen IT.

PLoS Genet. 2012 Jul;8(7):e1002784. doi: 10.1371/journal.pgen.1002784. Epub 2012 Jul 5.

PMID:
22792073
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Influence of cobalamin scarcity on diatom molecular physiology and identification of a cobalamin acquisition protein.

Bertrand EM, Allen AE, Dupont CL, Norden-Krichmar TM, Bai J, Valas RE, Saito MA.

Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):E1762-71. doi: 10.1073/pnas.1201731109. Epub 2012 May 31.

PMID:
22652568
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Melanopsin-based brightness discrimination in mice and humans.

Brown TM, Tsujimura S, Allen AE, Wynne J, Bedford R, Vickery G, Vugler A, Lucas RJ.

Curr Biol. 2012 Jun 19;22(12):1134-41. doi: 10.1016/j.cub.2012.04.039. Epub 2012 May 24.

PMID:
22633808
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Synergistic Catalysis: A Powerful Synthetic Strategy for New Reaction Development.

Allen AE, Macmillan DW.

Chem Sci. 2012 Jan 1;2012(3):633-658. Epub 2012 Jan 25.

PMID:
22518271
[PubMed]
Free PMC Article
19.

Leveraging metabolomics for functional investigations in sequenced marine diatoms.

Fernie AR, Obata T, Allen AE, Araújo WL, Bowler C.

Trends Plant Sci. 2012 Jul;17(7):395-403. doi: 10.1016/j.tplants.2012.02.005. Epub 2012 Mar 30. Review.

PMID:
22465020
[PubMed - indexed for MEDLINE]
20.

Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability.

Marchetti A, Schruth DM, Durkin CA, Parker MS, Kodner RB, Berthiaume CT, Morales R, Allen AE, Armbrust EV.

Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):E317-25. doi: 10.1073/pnas.1118408109. Epub 2012 Jan 18.

PMID:
22308424
[PubMed - indexed for MEDLINE]
Free PMC Article

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