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Results: 8

1.

Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.

Nurk S, Bankevich A, Antipov D, Gurevich AA, Korobeynikov A, Lapidus A, Prjibelski AD, Pyshkin A, Sirotkin A, Sirotkin Y, Stepanauskas R, Clingenpeel SR, Woyke T, McLean JS, Lasken R, Tesler G, Alekseyev MA, Pevzner PA.

J Comput Biol. 2013 Oct;20(10):714-37. doi: 10.1089/cmb.2013.0084.

2.

BayesHammer: Bayesian clustering for error correction in single-cell sequencing.

Nikolenko SI, Korobeynikov AI, Alekseyev MA.

BMC Genomics. 2013;14 Suppl 1:S7. doi: 10.1186/1471-2164-14-S1-S7. Epub 2013 Jan 21.

3.

On pairwise distances and median score of three genomes under DCJ.

Aganezov S Jr, Alekseyev MA.

BMC Bioinformatics. 2012;13 Suppl 19:S1. doi: 10.1186/1471-2105-13-S19-S1. Epub 2012 Dec 19.

4.

Pathset graphs: a novel approach for comprehensive utilization of paired reads in genome assembly.

Pham SK, Antipov D, Sirotkin A, Tesler G, Pevzner PA, Alekseyev MA.

J Comput Biol. 2013 Apr;20(4):359-71. doi: 10.1089/cmb.2012.0098. Epub 2012 Jul 17.

5.

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA.

J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.

6.

Comparative genomics reveals birth and death of fragile regions in mammalian evolution.

Alekseyev MA, Pevzner PA.

Genome Biol. 2010;11(11):R117. doi: 10.1186/gb-2010-11-11-r117. Epub 2010 Nov 30.

7.

Breakpoint graphs and ancestral genome reconstructions.

Alekseyev MA, Pevzner PA.

Genome Res. 2009 May;19(5):943-57. doi: 10.1101/gr.082784.108. Epub 2009 Feb 13.

8.

Are there rearrangement hotspots in the human genome?

Alekseyev MA, Pevzner PA.

PLoS Comput Biol. 2007 Nov;3(11):e209. Epub 2007 Sep 14.

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