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Results: 7

1.

Pathway activity inference for multiclass disease classification through a mathematical programming optimisation framework.

Yang L, Ainali C, Tsoka S, Papageorgiou LG.

BMC Bioinformatics. 2014 Dec 5;15(1):390. [Epub ahead of print]

PMID:
25475756
[PubMed - as supplied by publisher]
Free PMC Article
2.

Transcriptome classification reveals molecular subtypes in psoriasis.

Ainali C, Valeyev N, Perera G, Williams A, Gudjonsson JE, Ouzounis CA, Nestle FO, Tsoka S.

BMC Genomics. 2012 Sep 12;13:472. doi: 10.1186/1471-2164-13-472.

PMID:
22971201
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Mapping cis- and trans-regulatory effects across multiple tissues in twins.

Grundberg E, Small KS, Hedman ÅK, Nica AC, Buil A, Keildson S, Bell JT, Yang TP, Meduri E, Barrett A, Nisbett J, Sekowska M, Wilk A, Shin SY, Glass D, Travers M, Min JL, Ring S, Ho K, Thorleifsson G, Kong A, Thorsteindottir U, Ainali C, Dimas AS, Hassanali N, Ingle C, Knowles D, Krestyaninova M, Lowe CE, Di Meglio P, Montgomery SB, Parts L, Potter S, Surdulescu G, Tsaprouni L, Tsoka S, Bataille V, Durbin R, Nestle FO, O'Rahilly S, Soranzo N, Lindgren CM, Zondervan KT, Ahmadi KR, Schadt EE, Stefansson K, Smith GD, McCarthy MI, Deloukas P, Dermitzakis ET, Spector TD; Multiple Tissue Human Expression Resource (MuTHER) Consortium.

Nat Genet. 2012 Oct;44(10):1084-9. doi: 10.1038/ng.2394. Epub 2012 Sep 2.

PMID:
22941192
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins.

Ainali C, Simon M, Freilich S, Espinosa O, Hazelwood L, Tsoka S, Ouzounis CA, Hancock JM.

BMC Evol Biol. 2011 May 25;11:142. doi: 10.1186/1471-2148-11-142.

PMID:
21612628
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Metabolic homeostasis is maintained in myocardial hibernation by adaptive changes in the transcriptome and proteome.

Mayr M, May D, Gordon O, Madhu B, Gilon D, Yin X, Xing Q, Drozdov I, Ainali C, Tsoka S, Xu Q, Griffiths J, Horrevoets A, Keshet E.

J Mol Cell Cardiol. 2011 Jun;50(6):982-90. doi: 10.1016/j.yjmcc.2011.02.010. Epub 2011 Feb 24.

PMID:
21354174
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A systems model for immune cell interactions unravels the mechanism of inflammation in human skin.

Valeyev NV, Hundhausen C, Umezawa Y, Kotov NV, Williams G, Clop A, Ainali C, Ouzounis C, Tsoka S, Nestle FO.

PLoS Comput Biol. 2010 Dec 2;6(12):e1001024. doi: 10.1371/journal.pcbi.1001024.

PMID:
21152006
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences.

Smedley D, Schofield P, Chen CK, Aidinis V, Ainali C, Bard J, Balling R, Birney E, Blake A, Bongcam-Rudloff E, Brookes AJ, Cesareni G, Chandras C, Eppig J, Flicek P, Gkoutos G, Greenaway S, Gruenberger M, Hériché JK, Lyall A, Mallon AM, Muddyman D, Reisinger F, Ringwald M, Rosenthal N, Schughart K, Swertz M, Thorisson GA, Zouberakis M, Hancock JM.

Database (Oxford). 2010 Jul 6;2010:baq014. doi: 10.1093/database/baq014.

PMID:
20627863
[PubMed - indexed for MEDLINE]
Free PMC Article

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