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Results: 16

1.

Extraction of quantitative characteristics describing wheat leaf pubescence with a novel image-processing technique.

Genaev MA, Doroshkov AV, Pshenichnikova TA, Kolchanov NA, Afonnikov DA.

Planta. 2012 Dec;236(6):1943-54. doi: 10.1007/s00425-012-1751-6. Epub 2012 Sep 19.

PMID:
22990907
[PubMed - indexed for MEDLINE]
2.

[Morphological and genetic characteristics of leaf hairiness in wheat (Triticum aestivum L.) as analyzed by computer-aided phenotyping].

Doroshkov AV, Pshenichnikova TA, Afonnikov DA.

Genetika. 2011 Jun;47(6):836-41. Russian.

PMID:
21866865
[PubMed - indexed for MEDLINE]
3.

Molecular evolution of cyclin proteins in animals and fungi.

Gunbin KV, Suslov VV, Turnaev II, Afonnikov DA, Kolchanov NA.

BMC Evol Biol. 2011 Jul 28;11:224. doi: 10.1186/1471-2148-11-224.

PMID:
21798004
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Important role of hydrophobic interactions in high-pressure adaptation of proteins.

Afonnikov DA, Medvedev KE, Gunbin KV, Kolchanov NA.

Dokl Biochem Biophys. 2011 May-Jun;438:113-6. doi: 10.1134/S160767291103001X. Epub 2011 Jul 3. No abstract available.

PMID:
21725885
[PubMed - indexed for MEDLINE]
5.

Computer System for Analysis of Molecular Evolution Modes (SAMEM): analysis of molecular evolution modes at deep inner branches of the phylogenetic tree.

Gunbin KV, Suslov VV, Genaev MA, Afonnikov DA.

In Silico Biol. 2011-2012;11(3-4):109-23. doi: 10.3233/ISB-2012-0446.

PMID:
22935965
[PubMed - indexed for MEDLINE]
6.

Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions.

Gunbin KV, Afonnikov DA, Kolchanov NA.

BMC Genomics. 2009 Dec 30;10:639. doi: 10.1186/1471-2164-10-639.

PMID:
20042074
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Isolation and sequence analysis of the wheat B genome subtelomeric DNA.

Salina EA, Sergeeva EM, Adonina IG, Shcherban AB, Afonnikov DA, Belcram H, Huneau C, Chalhoub B.

BMC Genomics. 2009 Sep 5;10:414. doi: 10.1186/1471-2164-10-414.

PMID:
19732459
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Adaptive evolution of genes of archaea belonging to the genus Pyrococcus associated with adaptation to life under high-pressure conditions.

Gunbin KV, Afonnikov DA, Boldyreva EV, Kolchanov NA.

Dokl Biochem Biophys. 2009 Mar-Apr;425:91-3. No abstract available.

PMID:
19496330
[PubMed - indexed for MEDLINE]
9.

The evolution of the Hh-signaling pathway genes: a computer-assisted study.

Gunbin KV, Afonnikov DA, Kolchanov NA.

In Silico Biol. 2007;7(3):333-54.

PMID:
18415981
[PubMed - indexed for MEDLINE]
10.

Web-based computational tools for the prediction and analysis of post-translational modifications of proteins.

Ivanisenko VA, Afonnikov DA, Kolchanov NA.

Methods Mol Biol. 2008;446:363-84. doi: 10.1007/978-1-60327-084-7_25.

PMID:
18373270
[PubMed - indexed for MEDLINE]
11.

CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences.

Afonnikov DA, Kolchanov NA.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W64-8.

PMID:
15215352
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

[Integrated computer system for regulating eukaryotic gene expression].

Kolchanov NA, Podkolodnaya OA, Ananko EA, Afonnikov DA, Vishnevsky OV, Vorobiev DG, Ignatieva EV, Levitskiĭ VG, Likhoshvaĭ VA, Omelyanchuk NA, Podkolodny NL, Ratushny AV, Suslov VV.

Mol Biol (Mosk). 2004 Jan-Feb;38(1):69-81. Review. Russian.

PMID:
15042837
[PubMed - indexed for MEDLINE]
13.

ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro.

Valuev VP, Afonnikov DA, Ponomarenko MP, Milanesi L, Kolchanov NA.

Nucleic Acids Res. 2002 Jan 1;30(1):200-2.

PMID:
11752292
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The conserved characteristics of DNA-binding domains belonging to the homeodomain class that are associated with coadaptive substitutions of amino acid residues.

Afonnikov DA, Koichanov NA.

Dokl Biochem Biophys. 2001 Sep-Oct;380:352-5. No abstract available.

PMID:
11727564
[PubMed - indexed for MEDLINE]
15.

Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions.

Afonnikov DA, Oshchepkov DY, Kolchanov NA.

Bioinformatics. 2001 Nov;17(11):1035-46.

PMID:
11724732
[PubMed - indexed for MEDLINE]
Free Article
16.

[Detection of correlating DNA-binding positions in CREB and AP-1 family transcription factors].

Afonnikov DA, Kondrakhin IuV, Titov II.

Mol Biol (Mosk). 1997 Jul-Aug;31(4):741-8. Russian. No abstract available.

PMID:
9340500
[PubMed - indexed for MEDLINE]

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