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Results: 1 to 20 of 21

1.

Plant auxin biosynthesis did not originate in charophytes.

Turnaev II, Gunbin KV, Afonnikov DA.

Trends Plant Sci. 2015 Jul 14. pii: S1360-1385(15)00150-8. doi: 10.1016/j.tplants.2015.06.004. [Epub ahead of print] No abstract available.

PMID:
26186977
2.

Identification of microRNA genes in three opisthorchiids.

Ovchinnikov VY, Afonnikov DA, Vasiliev GV, Kashina EV, Sripa B, Mordvinov VA, Katokhin AV.

PLoS Negl Trop Dis. 2015 Apr 21;9(4):e0003680. doi: 10.1371/journal.pntd.0003680. eCollection 2015 Apr.

3.

Comparison of the three-dimensional organization of sperm and fibroblast genomes using the Hi-C approach.

Battulin N, Fishman VS, Mazur AM, Pomaznoy M, Khabarova AA, Afonnikov DA, Prokhortchouk EB, Serov OL.

Genome Biol. 2015 Apr 14;16:77. doi: 10.1186/s13059-015-0642-0.

4.

[Genetic analysis of leaf pubescence in isogenic lines of conmmon wheat Novosibirsk 67].

Doroshkov AV, Afonnikov DA, Pshenichnikova TA.

Genetika. 2014 Feb;50(2):172-80. Russian.

PMID:
25711025
5.

Molecular dynamics simulations of the Nip7 proteins from the marine deep- and shallow-water Pyrococcus species.

Medvedev KE, Alemasov NA, Vorobjev YN, Boldyreva EV, Kolchanov NA, Afonnikov DA.

BMC Struct Biol. 2014 Oct 15;14:23. doi: 10.1186/s12900-014-0023-z.

6.

Extraction of quantitative characteristics describing wheat leaf pubescence with a novel image-processing technique.

Genaev MA, Doroshkov AV, Pshenichnikova TA, Kolchanov NA, Afonnikov DA.

Planta. 2012 Dec;236(6):1943-54. doi: 10.1007/s00425-012-1751-6. Epub 2012 Sep 19.

PMID:
22990907
7.

[Morphological and genetic characteristics of leaf hairiness in wheat (Triticum aestivum L.) as analyzed by computer-aided phenotyping].

Doroshkov AV, Pshenichnikova TA, Afonnikov DA.

Genetika. 2011 Jun;47(6):836-41. Russian.

PMID:
21866865
8.

Molecular evolution of cyclin proteins in animals and fungi.

Gunbin KV, Suslov VV, Turnaev II, Afonnikov DA, Kolchanov NA.

BMC Evol Biol. 2011 Jul 28;11:224. doi: 10.1186/1471-2148-11-224.

9.

Important role of hydrophobic interactions in high-pressure adaptation of proteins.

Afonnikov DA, Medvedev KE, Gunbin KV, Kolchanov NA.

Dokl Biochem Biophys. 2011 May-Jun;438:113-6. doi: 10.1134/S160767291103001X. Epub 2011 Jul 3. No abstract available.

PMID:
21725885
10.

Computer System for Analysis of Molecular Evolution Modes (SAMEM): analysis of molecular evolution modes at deep inner branches of the phylogenetic tree.

Gunbin KV, Suslov VV, Genaev MA, Afonnikov DA.

In Silico Biol. 2011-2012;11(3-4):109-23. doi: 10.3233/ISB-2012-0446.

PMID:
22935965
11.

Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions.

Gunbin KV, Afonnikov DA, Kolchanov NA.

BMC Genomics. 2009 Dec 30;10:639. doi: 10.1186/1471-2164-10-639.

12.

Isolation and sequence analysis of the wheat B genome subtelomeric DNA.

Salina EA, Sergeeva EM, Adonina IG, Shcherban AB, Afonnikov DA, Belcram H, Huneau C, Chalhoub B.

BMC Genomics. 2009 Sep 5;10:414. doi: 10.1186/1471-2164-10-414.

13.

Adaptive evolution of genes of archaea belonging to the genus Pyrococcus associated with adaptation to life under high-pressure conditions.

Gunbin KV, Afonnikov DA, Boldyreva EV, Kolchanov NA.

Dokl Biochem Biophys. 2009 Mar-Apr;425:91-3. No abstract available.

PMID:
19496330
14.

The evolution of the Hh-signaling pathway genes: a computer-assisted study.

Gunbin KV, Afonnikov DA, Kolchanov NA.

In Silico Biol. 2007;7(3):333-54.

PMID:
18415981
15.

Web-based computational tools for the prediction and analysis of post-translational modifications of proteins.

Ivanisenko VA, Afonnikov DA, Kolchanov NA.

Methods Mol Biol. 2008;446:363-84. doi: 10.1007/978-1-60327-084-7_25.

PMID:
18373270
16.

CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences.

Afonnikov DA, Kolchanov NA.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W64-8.

17.

[Integrated computer system for regulating eukaryotic gene expression].

Kolchanov NA, Podkolodnaya OA, Ananko EA, Afonnikov DA, Vishnevsky OV, Vorobiev DG, Ignatieva EV, LevitskiÄ­ VG, LikhoshvaÄ­ VA, Omelyanchuk NA, Podkolodny NL, Ratushny AV, Suslov VV.

Mol Biol (Mosk). 2004 Jan-Feb;38(1):69-81. Review. Russian.

PMID:
15042837
18.

ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro.

Valuev VP, Afonnikov DA, Ponomarenko MP, Milanesi L, Kolchanov NA.

Nucleic Acids Res. 2002 Jan 1;30(1):200-2.

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