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Results: 1 to 20 of 636

1.

Direct Analytical Sample Quality Assessment (DASQ) for Biomarker Investigation: qualifying CSF samples.

Greco V, Pieragostino D, Piras C, Aebersold R, Wiltfang J, Caltagirone C, Bernardini S, Urbani A.

Proteomics. 2014 Jul 15. doi: 10.1002/pmic.201300565. [Epub ahead of print]

PMID:
25044759
[PubMed - as supplied by publisher]
2.

Quantitative ADME Proteomics - CYP and UGT Enzymes in the Beagle Dog Liver and Intestine.

Heikkinen AT, Friedlein A, Matondo M, Hatley OJ, Petsalo A, Juvonen R, Galetin A, Rostami-Hodjegan A, Aebersold R, Lamerz J, Dunkley T, Cutler P, Parrott N.

Pharm Res. 2014 Jul 18. [Epub ahead of print]

PMID:
25033762
[PubMed - as supplied by publisher]
3.

Phosphoproteomic analysis identifies proteins involved in transcription-coupled mRNA decay as targets of Snf1 signaling.

Braun KA, Vaga S, Dombek KM, Fang F, Palmisano S, Aebersold R, Young ET.

Sci Signal. 2014 Jul 8;7(333):ra64. doi: 10.1126/scisignal.2005000.

PMID:
25005228
[PubMed - in process]
4.

Spatial proteomic and phospho-proteomic organization in three prototypical cell migration modes.

Fengos G, Schmidt A, Martin K, Fluri E, Aebersold R, Iber D, Pertz O.

Proteome Sci. 2014 May 1;12:23. doi: 10.1186/1477-5956-12-23. eCollection 2014.

PMID:
24987309
[PubMed]
Free PMC Article
5.

PRIME-XS, a European infrastructure for proteomics.

Raijmakers R, Olsen JV, Aebersold R, Heck AJ.

Mol Cell Proteomics. 2014 Jun 23. pii: mcp.E114.040162. [Epub ahead of print]

PMID:
24958170
[PubMed - as supplied by publisher]
Free Article
6.

Chemical cross-linking/mass spectrometry targeting acidic residues in proteins and protein complexes.

Leitner A, Joachimiak LA, Unverdorben P, Walzthoeni T, Frydman J, Förster F, Aebersold R.

Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):9455-60. doi: 10.1073/pnas.1320298111. Epub 2014 Jun 17.

PMID:
24938783
[PubMed - in process]
Free PMC Article
7.

The Calcineurin Signaling Network Evolves via Conserved Kinase-Phosphatase Modules that Transcend Substrate Identity.

Goldman A, Roy J, Bodenmiller B, Wanka S, Landry CR, Aebersold R, Cyert MS.

Mol Cell. 2014 Jun 11. pii: S1097-2765(14)00406-7. doi: 10.1016/j.molcel.2014.05.012. [Epub ahead of print]

PMID:
24930733
[PubMed - as supplied by publisher]
8.

Mass spectrometry-driven phosphoproteomics: patterning the systems biology mosaic.

Jünger MA, Aebersold R.

Wiley Interdiscip Rev Dev Biol. 2014 Jan-Feb;3(1):83-112. doi: 10.1002/wdev.121. Epub 2013 Jul 2.

PMID:
24902836
[PubMed - in process]
9.

qcML: an exchange format for quality control metrics from mass spectrometry experiments.

Walzer M, Pernas LE, Nasso S, Bittremieux W, Nahnsen S, Kelchtermans P, Pichler P, van den Toorn HW, Staes A, Vandenbussche J, Mazanek M, Taus T, Scheltema RA, Kelstrup CD, Gatto L, van Breukelen B, Aiche S, Valkenborg D, Laukens K, Lilley KS, Olsen JV, Heck AJ, Mechtler K, Aebersold R, Gevaert K, Vizcaino JA, Hermjakob H, Kohlbacher O, Martens L.

Mol Cell Proteomics. 2014 Apr 23. [Epub ahead of print]

PMID:
24760958
[PubMed - as supplied by publisher]
Free Article
10.

aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data.

Rosenberger G, Ludwig C, Röst HL, Aebersold R, Malmström L.

Bioinformatics. 2014 May 10. [Epub ahead of print]

PMID:
24753486
[PubMed - as supplied by publisher]
Free Article
11.

Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness.

Liu Y, Chen J, Sethi A, Li QK, Chen L, Collins B, Gillet LC, Wollscheid B, Zhang H, Aebersold R.

Mol Cell Proteomics. 2014 Jul;13(7):1753-68. doi: 10.1074/mcp.M114.038273. Epub 2014 Apr 16.

PMID:
24741114
[PubMed - in process]
12.

Modulation of the chromatin phosphoproteome by the haspin protein kinase.

Maiolica A, de Medina-Redondo M, Schoof EM, Chaikuad A, Villa F, Gatti M, Jeganathan S, Lou HJ, Novy K, Hauri S, Toprak UH, Herzog F, Meraldi P, Penengo L, Turk BE, Knapp S, Linding R, Aebersold R.

Mol Cell Proteomics. 2014 Jul;13(7):1724-40. doi: 10.1074/mcp.M113.034819. Epub 2014 Apr 14.

PMID:
24732914
[PubMed - in process]
13.

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

Röst HL, Rosenberger G, Navarro P, Gillet L, Miladinović SM, Schubert OT, Wolski W, Collins BC, Malmström J, Malmström L, Aebersold R.

Nat Biotechnol. 2014 Mar;32(3):219-23. doi: 10.1038/nbt.2841. No abstract available.

PMID:
24727770
[PubMed - in process]
14.

Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics.

Toprak UH, Gillet LC, Maiolica A, Navarro P, Leitner A, Aebersold R.

Mol Cell Proteomics. 2014 Mar 12. [Epub ahead of print]

PMID:
24623587
[PubMed - as supplied by publisher]
Free Article
15.

Highlights of B/D-HPP and HPP Resource Pillar Workshops at 12th Annual HUPO World Congress of Proteomics: September 14-18, 2013, Yokohama, Japan.

Aebersold R, Bader GD, Edwards AM, van Eyk J, Kussman M, Qin J, Omenn GS.

Proteomics. 2014 May;14(9):975-88. doi: 10.1002/pmic.201400041.

PMID:
24596128
[PubMed - in process]
16.

Quantitative proteomics analysis of signalosome dynamics in primary T cells identifies the surface receptor CD6 as a Lat adaptor-independent TCR signaling hub.

Roncagalli R, Hauri S, Fiore F, Liang Y, Chen Z, Sansoni A, Kanduri K, Joly R, Malzac A, Lähdesmäki H, Lahesmaa R, Yamasaki S, Saito T, Malissen M, Aebersold R, Gstaiger M, Malissen B.

Nat Immunol. 2014 Apr;15(4):384-92. doi: 10.1038/ni.2843. Epub 2014 Mar 2.

PMID:
24584089
[PubMed - indexed for MEDLINE]
17.

A mass spectrometry-based hybrid method for structural modeling of protein complexes.

Politis A, Stengel F, Hall Z, Hernández H, Leitner A, Walzthoeni T, Robinson CV, Aebersold R.

Nat Methods. 2014 Apr;11(4):403-6. doi: 10.1038/nmeth.2841. Epub 2014 Feb 9.

PMID:
24509631
[PubMed - indexed for MEDLINE]
18.

Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach.

Carr SA, Abbatiello SE, Ackermann BL, Borchers C, Domon B, Deutsch EW, Grant RP, Hoofnagle AN, Hüttenhain R, Koomen JM, Liebler DC, Liu T, MacLean B, Mani DR, Mansfield E, Neubert H, Paulovich AG, Reiter L, Vitek O, Aebersold R, Anderson L, Bethem R, Blonder J, Boja E, Botelho J, Boyne M, Bradshaw RA, Burlingame AL, Chan D, Keshishian H, Kuhn E, Kinsinger C, Lee JS, Lee SW, Moritz R, Oses-Prieto J, Rifai N, Ritchie J, Rodriguez H, Srinivas PR, Townsend RR, Van Eyk J, Whiteley G, Wiita A, Weintraub S.

Mol Cell Proteomics. 2014 Mar;13(3):907-17. doi: 10.1074/mcp.M113.036095. Epub 2014 Jan 17.

PMID:
24443746
[PubMed - in process]
Free PMC Article
19.

Targeted protein quantification using sparse reference labeling.

Chang CY, Sabidó E, Aebersold R, Vitek O.

Nat Methods. 2014 Mar;11(3):301-4. doi: 10.1038/nmeth.2806. Epub 2014 Jan 19.

PMID:
24441934
[PubMed - indexed for MEDLINE]
20.

Early steps in autophagy depend on direct phosphorylation of Atg9 by the Atg1 kinase.

Papinski D, Schuschnig M, Reiter W, Wilhelm L, Barnes CA, Maiolica A, Hansmann I, Pfaffenwimmer T, Kijanska M, Stoffel I, Lee SS, Brezovich A, Lou JH, Turk BE, Aebersold R, Ammerer G, Peter M, Kraft C.

Mol Cell. 2014 Feb 6;53(3):471-83. doi: 10.1016/j.molcel.2013.12.011. Epub 2014 Jan 16. Erratum in: Mol Cell. 2014 Feb 6;53(3):515.

PMID:
24440502
[PubMed - indexed for MEDLINE]
Free PMC Article

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