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Items: 1 to 20 of 697

1.

The interdependence of transcript and protein abundance: new data-new complexities.

Liu Y, Aebersold R.

Mol Syst Biol. 2016 Jan 20;12(1):856. doi: 10.15252/msb.20156720. No abstract available.

2.

Attenuation of pattern recognition receptor signaling is mediated by a MAP kinase kinase kinase.

Mithoe SC, Ludwig C, Pel MJ, Cucinotta M, Casartelli A, Mbengue M, Sklenar J, Derbyshire P, Robatzek S, Pieterse CM, Aebersold R, Menke FL.

EMBO Rep. 2016 Jan 14. pii: e201540806. [Epub ahead of print]

PMID:
26769563
3.

Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.

Hoofnagle AN, Whiteaker JR, Carr SA, Kuhn E, Liu T, Massoni SA, Thomas SN, Townsend RR, Zimmerman LJ, Boja E, Chen J, Crimmins DL, Davies SR, Gao Y, Hiltke TR, Ketchum KA, Kinsinger CR, Mesri M, Meyer MR, Qian WJ, Schoenherr RM, Scott MG, Shi T, Whiteley GR, Wrobel JA, Wu C, Ackermann BL, Aebersold R, Barnidge DR, Bunk DM, Clarke N, Fishman JB, Grant RP, Kusebauch U, Kushnir MM, Lowenthal MS, Moritz RL, Neubert H, Patterson SD, Rockwood AL, Rogers J, Singh RJ, Van Eyk JE, Wong SH, Zhang S, Chan DW, Chen X, Ellis MJ, Liebler DC, Rodland KD, Rodriguez H, Smith RD, Zhang Z, Zhang H, Paulovich AG.

Clin Chem. 2016 Jan;62(1):48-69. doi: 10.1373/clinchem.2015.250563.

PMID:
26719571
4.

Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation.

Greber BJ, Gerhardy S, Leitner A, Leibundgut M, Salem M, Boehringer D, Leulliot N, Aebersold R, Panse VG, Ban N.

Cell. 2016 Jan 14;164(1-2):91-102. doi: 10.1016/j.cell.2015.11.027. Epub 2015 Dec 17.

PMID:
26709046
5.

Quantitative proteomics signature profiling based on network contextualization.

Goh WW, Guo T, Aebersold R, Wong L.

Biol Direct. 2015 Dec 15;10(1):71. doi: 10.1186/s13062-015-0098-x.

6.

Crosslinking and Mass Spectrometry: An Integrated Technology to Understand the Structure and Function of Molecular Machines.

Leitner A, Faini M, Stengel F, Aebersold R.

Trends Biochem Sci. 2016 Jan;41(1):20-32. doi: 10.1016/j.tibs.2015.10.008. Epub 2015 Dec 1. Review.

PMID:
26654279
7.

The quantitative and condition-dependent Escherichia coli proteome.

Schmidt A, Kochanowski K, Vedelaar S, Ahrné E, Volkmer B, Callipo L, Knoops K, Bauer M, Aebersold R, Heinemann M.

Nat Biotechnol. 2016 Jan;34(1):104-10. doi: 10.1038/nbt.3418. Epub 2015 Dec 7.

PMID:
26641532
8.

Analysis of Major Histocompatibility Complex (MHC) Immunopeptidomes Using Mass Spectrometry.

Caron E, Kowalewski DJ, Chiek Koh C, Sturm T, Schuster H, Aebersold R.

Mol Cell Proteomics. 2015 Dec;14(12):3105-17. doi: 10.1074/mcp.M115.052431. Review.

PMID:
26628741
9.

Microbial Proteome Profiling and Systems Biology: Applications to Mycobacterium tuberculosis.

Schubert OT, Aebersold R.

Adv Exp Med Biol. 2015;883:235-54. doi: 10.1007/978-3-319-23603-2_13.

PMID:
26621471
10.

Reproducible quantitative proteotype data matrices for systems biology.

Röst HL, Malmström L, Aebersold R.

Mol Biol Cell. 2015 Nov 5;26(22):3926-31. doi: 10.1091/mbc.E15-07-0507.

11.

xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry.

Walzthoeni T, Joachimiak LA, Rosenberger G, Röst HL, Malmström L, Leitner A, Frydman J, Aebersold R.

Nat Methods. 2015 Dec;12(12):1185-90. doi: 10.1038/nmeth.3631. Epub 2015 Oct 26.

PMID:
26501516
12.

Antigenic Characterization of the HCMV gH/gL/gO and Pentamer Cell Entry Complexes Reveals Binding Sites for Potently Neutralizing Human Antibodies.

Ciferri C, Chandramouli S, Leitner A, Donnarumma D, Cianfrocco MA, Gerrein R, Friedrich K, Aggarwal Y, Palladino G, Aebersold R, Norais N, Settembre EC, Carfi A.

PLoS Pathog. 2015 Oct 20;11(10):e1005230. doi: 10.1371/journal.ppat.1005230. eCollection 2015 Oct.

13.

Analysis of MHC immunopeptidomes using mass spectrometry.

Caron E, Kowalewski DJ, Koh CC, Sturm T, Schuster H, Aebersold R.

Mol Cell Proteomics. 2015 Oct 19. pii: mcp.O115.052431. [Epub ahead of print]

14.

Multiplexed Targeted Mass Spectrometry-Based Assays for the Quantification of N-Linked Glycosite-Containing Peptides in Serum.

Thomas SN, Harlan R, Chen J, Aiyetan P, Liu Y, Sokoll LJ, Aebersold R, Chan DW, Zhang H.

Anal Chem. 2015 Nov 3;87(21):10830-8. doi: 10.1021/acs.analchem.5b02063. Epub 2015 Oct 21.

15.

Epigenetics and Proteomics Join Transcriptomics in the Quest for Tuberculosis Biomarkers.

Esterhuyse MM, Weiner J 3rd, Caron E, Loxton AG, Iannaccone M, Wagman C, Saikali P, Stanley K, Wolski WE, Mollenkopf HJ, Schick M, Aebersold R, Linhart H, Walzl G, Kaufmann SH.

MBio. 2015 Sep 15;6(5):e01187-15. doi: 10.1128/mBio.01187-15.

16.

Minimal sample requirement for highly multiplexed protein quantification in cell lines and tissues by PCT-SWATH mass spectrometry.

Shao S, Guo T, Koh CC, Gillessen S, Joerger M, Jochum W, Aebersold R.

Proteomics. 2015 Nov;15(21):3711-21. doi: 10.1002/pmic.201500161. Epub 2015 Sep 10.

PMID:
26287124
17.

Global Metabonomic and Proteomic Analysis of Human Conjunctival Epithelial Cells (IOBA-NHC) in Response to Hyperosmotic Stress.

Chen L, Li J, Guo T, Ghosh S, Koh SK, Tian D, Zhang L, Jia D, Beuerman RW, Aebersold R, Chan EC, Zhou L.

J Proteome Res. 2015 Sep 4;14(9):3982-95. doi: 10.1021/acs.jproteome.5b00443. Epub 2015 Aug 19.

PMID:
26260330
18.

Prediction of colorectal cancer diagnosis based on circulating plasma proteins.

Surinova S, Choi M, Tao S, Schüffler PJ, Chang CY, Clough T, Vysloužil K, Khoylou M, Srovnal J, Liu Y, Matondo M, Hüttenhain R, Weisser H, Buhmann JM, Hajdúch M, Brenner H, Vitek O, Aebersold R.

EMBO Mol Med. 2015 Aug 7;7(9):1166-78. doi: 10.15252/emmm.201404873.

19.

Non-invasive prognostic protein biomarker signatures associated with colorectal cancer.

Surinova S, Radová L, Choi M, Srovnal J, Brenner H, Vitek O, Hajdúch M, Aebersold R.

EMBO Mol Med. 2015 Aug 7;7(9):1153-65. doi: 10.15252/emmm.201404874.

20.

Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation.

Nillegoda NB, Kirstein J, Szlachcic A, Berynskyy M, Stank A, Stengel F, Arnsburg K, Gao X, Scior A, Aebersold R, Guilbride DL, Wade RC, Morimoto RI, Mayer MP, Bukau B.

Nature. 2015 Aug 13;524(7564):247-51. doi: 10.1038/nature14884. Epub 2015 Aug 5.

PMID:
26245380
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