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Results: 1 to 20 of 108

1.

Crystal structures of the F and pSLT plasmid TraJ N-terminal regions reveal similar homodimeric PAS folds with functional interchangeability.

Lu J, Wu R, Adkins JN, Joachimiak A, Glover JN.

Biochemistry. 2014 Aug 22. [Epub ahead of print]

PMID:
25148268
[PubMed - as supplied by publisher]
2.

A method to determine lysine acetylation stoichiometries.

Nakayasu ES, Wu S, Sydor MA, Shukla AK, Weitz KK, Moore RJ, Hixson KK, Kim JS, Petyuk VA, Monroe ME, Pasa-Tolic L, Qian WJ, Smith RD, Adkins JN, Ansong C.

Int J Proteomics. 2014;2014:730725. doi: 10.1155/2014/730725. Epub 2014 Jul 20.

PMID:
25143833
[PubMed]
Free PMC Article
3.

Polysialylated N-Glycans Identified in Human Serum Through Combined Developments in Sample Preparation, Separations, and Electrospray Ionization-Mass Spectrometry.

Kronewitter SR, Marginean I, Cox JT, Zhao R, Hagler CD, Shukla AK, Carlson TS, Adkins JN, Camp DG 2nd, Moore RJ, Rodland KD, Smith RD.

Anal Chem. 2014 Aug 21. [Epub ahead of print]

PMID:
25118826
[PubMed - as supplied by publisher]
4.

Structural and functional characterization of DUF1471 domains of Salmonella proteins SrfN, YdgH/SssB, and YahO.

Eletsky A, Michalska K, Houliston S, Zhang Q, Daily MD, Xu X, Cui H, Yee A, Lemak A, Wu B, Garcia M, Burnet MC, Meyer KM, Aryal UK, Sanchez O, Ansong C, Xiao R, Acton TB, Adkins JN, Montelione GT, Joachimiak A, Arrowsmith CH, Savchenko A, Szyperski T, Cort JR.

PLoS One. 2014 Jul 10;9(7):e101787. doi: 10.1371/journal.pone.0101787. eCollection 2014.

PMID:
25010333
[PubMed - in process]
Free PMC Article
5.

Distance restraints from crosslinking mass spectrometry: mining a molecular dynamics simulation database to evaluate lysine-lysine distances.

Merkley ED, Rysavy S, Kahraman A, Hafen RP, Daggett V, Adkins JN.

Protein Sci. 2014 Jun;23(6):747-59. doi: 10.1002/pro.2458. Epub 2014 Apr 3.

PMID:
24639379
[PubMed - in process]
6.

Phosphate-containing polyethylene glycol polymers prevent lethal sepsis by multidrug-resistant pathogens.

Zaborin A, Defazio JR, Kade M, Kaiser BL, Belogortseva N, Camp DG 2nd, Smith RD, Adkins JN, Kim SM, Alverdy A, Goldfeld D, Firestone MA, Collier JH, Jabri B, Tirrell M, Zaborina O, Alverdy JC.

Antimicrob Agents Chemother. 2014 Feb;58(2):966-77. doi: 10.1128/AAC.02183-13. Epub 2013 Nov 25.

PMID:
24277029
[PubMed - in process]
Free PMC Article
7.

Activated ClpP kills persisters and eradicates a chronic biofilm infection.

Conlon BP, Nakayasu ES, Fleck LE, LaFleur MD, Isabella VM, Coleman K, Leonard SN, Smith RD, Adkins JN, Lewis K.

Nature. 2013 Nov 21;503(7476):365-70. doi: 10.1038/nature12790. Epub 2013 Nov 13.

PMID:
24226776
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A semiautomated framework for integrating expert knowledge into disease marker identification.

Wang J, Webb-Robertson BJ, Matzke MM, Varnum SM, Brown JN, Riensche RM, Adkins JN, Jacobs JM, Hoidal JR, Scholand MB, Pounds JG, Blackburn MR, Rodland KD, McDermott JE.

Dis Markers. 2013;35(5):513-23. doi: 10.1155/2013/613529. Epub 2013 Oct 10.

PMID:
24223463
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data.

Schmidt BJ, Ebrahim A, Metz TO, Adkins JN, Palsson BØ, Hyduke DR.

Bioinformatics. 2013 Nov 15;29(22):2900-8. doi: 10.1093/bioinformatics/btt493. Epub 2013 Aug 23.

PMID:
23975765
[PubMed - indexed for MEDLINE]
10.

Comparative phosphoproteomics reveals components of host cell invasion and post-transcriptional regulation during Francisella infection.

Nakayasu ES, Tempel R, Cambronne XA, Petyuk VA, Jones MB, Gritsenko MA, Monroe ME, Yang F, Smith RD, Adkins JN, Heffron F.

Mol Cell Proteomics. 2013 Nov;12(11):3297-309. doi: 10.1074/mcp.M113.029850. Epub 2013 Aug 22.

PMID:
23970565
[PubMed - indexed for MEDLINE]
11.

Diverse secreted effectors are required for Salmonella persistence in a mouse infection model.

Kidwai AS, Mushamiri I, Niemann GS, Brown RN, Adkins JN, Heffron F.

PLoS One. 2013 Aug 12;8(8):e70753. doi: 10.1371/journal.pone.0070753. eCollection 2013.

PMID:
23950998
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Cross-linking and mass spectrometry methodologies to facilitate structural biology: finding a path through the maze.

Merkley ED, Cort JR, Adkins JN.

J Struct Funct Genomics. 2013 Sep;14(3):77-90. doi: 10.1007/s10969-013-9160-z. Epub 2013 Aug 7. Review.

PMID:
23917845
[PubMed - indexed for MEDLINE]
13.

A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection.

Deatherage Kaiser BL, Li J, Sanford JA, Kim YM, Kronewitter SR, Jones MB, Peterson CT, Peterson SN, Frank BC, Purvine SO, Brown JN, Metz TO, Smith RD, Heffron F, Adkins JN.

PLoS One. 2013 Jun 26;8(6):e67155. Print 2013.

PMID:
23840608
[PubMed - as supplied by publisher]
Free PMC Article
14.

Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions.

Ansong C, Wu S, Meng D, Liu X, Brewer HM, Deatherage Kaiser BL, Nakayasu ES, Cort JR, Pevzner P, Smith RD, Heffron F, Adkins JN, Pasa-Tolic L.

Proc Natl Acad Sci U S A. 2013 Jun 18;110(25):10153-8. doi: 10.1073/pnas.1221210110. Epub 2013 May 29.

PMID:
23720318
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evaluation of selected binding domains for the analysis of ubiquitinated proteomes.

Nakayasu ES, Ansong C, Brown JN, Yang F, Lopez-Ferrer D, Qian WJ, Smith RD, Adkins JN.

J Am Soc Mass Spectrom. 2013 Aug;24(8):1214-23. doi: 10.1007/s13361-013-0619-8. Epub 2013 May 7.

PMID:
23649778
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Multi-omic data integration links deleted in breast cancer 1 (DBC1) degradation to chromatin remodeling in inflammatory response.

Nakayasu ES, Brown RN, Ansong C, Sydor MA, Imtiaz S, Mihai C, Sontag R, Hixson KK, Monroe ME, Sobreira TJ, Orr G, Petyuk VA, Yang F, Smith RD, Adkins JN.

Mol Cell Proteomics. 2013 Aug;12(8):2136-47. doi: 10.1074/mcp.M112.026138. Epub 2013 May 2.

PMID:
23639857
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The genome organization of Thermotoga maritima reflects its lifestyle.

Latif H, Lerman JA, Portnoy VA, Tarasova Y, Nagarajan H, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Lee DH, Qiu Y, Zengler K.

PLoS Genet. 2013 Apr;9(4):e1003485. doi: 10.1371/journal.pgen.1003485. Epub 2013 Apr 25.

PMID:
23637642
[PubMed - in process]
Free PMC Article
18.

New sub-family of lysozyme-like proteins shows no catalytic activity: crystallographic and biochemical study of STM3605 protein from Salmonella Typhimurium.

Michalska K, Brown RN, Li H, Jedrzejczak R, Niemann GS, Heffron F, Cort JR, Adkins JN, Babnigg G, Joachimiak A.

J Struct Funct Genomics. 2013 Mar;14(1):1-10. doi: 10.1007/s10969-013-9151-0. Epub 2013 Apr 10.

PMID:
23572252
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes.

Kim YM, Schmidt BJ, Kidwai AS, Jones MB, Deatherage Kaiser BL, Brewer HM, Mitchell HD, Palsson BO, McDermott JE, Heffron F, Smith RD, Peterson SN, Ansong C, Hyduke DR, Metz TO, Adkins JN.

Mol Biosyst. 2013 Jun;9(6):1522-34. doi: 10.1039/c3mb25598k. Epub 2013 Apr 5.

PMID:
23559334
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Mixed-isotope labeling with LC-IMS-MS for characterization of protein-protein interactions by chemical cross-linking.

Merkley ED, Baker ES, Crowell KL, Orton DJ, Taverner T, Ansong C, Ibrahim YM, Burnet MC, Cort JR, Anderson GA, Smith RD, Adkins JN.

J Am Soc Mass Spectrom. 2013 Mar;24(3):444-9. doi: 10.1007/s13361-012-0565-x. Epub 2013 Feb 20.

PMID:
23423792
[PubMed - indexed for MEDLINE]
Free PMC Article

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