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Results: 1 to 20 of 65

1.

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications.

Lucas SJ, Akpınar BA, Šimková H, Kubaláková M, DoleŽel J, Budak H.

BMC Genomics. 2014 Dec 9;15:1080. doi: 10.1186/1471-2164-15-1080.

PMID:
25487001
[PubMed - in process]
Free PMC Article
2.

LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome.

Barghini E, Natali L, Giordani T, Cossu RM, Scalabrin S, Cattonaro F, Simková H, Vrána J, Doležel J, Morgante M, Cavallini A.

DNA Res. 2014 Nov 26. pii: dsu042. [Epub ahead of print]

PMID:
25428895
[PubMed - as supplied by publisher]
3.

Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A.

Poursarebani N, Nussbaumer T, Simková H, Safář J, Witsenboer H, van Oeveren J, Doležel J, Mayer KF, Stein N, Schnurbusch T.

Plant J. 2014 Jul;79(2):334-47. doi: 10.1111/tpj.12550. Epub 2014 Jun 19.

PMID:
24813060
[PubMed - in process]
Free PMC Article
4.

A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies.

Ruperao P, Chan CK, Azam S, Karafiátová M, Hayashi S, Cížková J, Saxena RK, Simková H, Song C, Vrána J, Chitikineni A, Visendi P, Gaur PM, Millán T, Singh KB, Taran B, Wang J, Batley J, Doležel J, Varshney RK, Edwards D.

Plant Biotechnol J. 2014 Aug;12(6):778-86. doi: 10.1111/pbi.12182. Epub 2014 Apr 5.

PMID:
24702794
[PubMed - in process]
5.

Flow cytometric chromosome sorting from diploid progenitors of bread wheat, T. urartu, Ae. speltoides and Ae. tauschii.

Molnár I, Kubaláková M, Šimková H, Farkas A, Cseh A, Megyeri M, Vrána J, Molnár-Láng M, Doležel J.

Theor Appl Genet. 2014 May;127(5):1091-104. doi: 10.1007/s00122-014-2282-2. Epub 2014 Feb 20.

PMID:
24553964
[PubMed - indexed for MEDLINE]
6.

Advances in plant chromosome genomics.

Doležel J, Vrána J, Cápal P, Kubaláková M, Burešová V, Simková H.

Biotechnol Adv. 2014 Jan-Feb;32(1):122-36. doi: 10.1016/j.biotechadv.2013.12.011. Epub 2014 Jan 7. Review.

PMID:
24406816
[PubMed - indexed for MEDLINE]
Free Article
7.

The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution.

Raats D, Frenkel Z, Krugman T, Dodek I, Sela H, Simková H, Magni F, Cattonaro F, Vautrin S, Bergès H, Wicker T, Keller B, Leroy P, Philippe R, Paux E, Doležel J, Feuillet C, Korol A, Fahima T.

Genome Biol. 2013 Dec 20;14(12):R138. doi: 10.1186/gb-2013-14-12-r138.

PMID:
24359668
[PubMed - in process]
Free PMC Article
8.

A physical map of the short arm of wheat chromosome 1A.

Breen J, Wicker T, Shatalina M, Frenkel Z, Bertin I, Philippe R, Spielmeyer W, Simková H, Safář J, Cattonaro F, Scalabrin S, Magni F, Vautrin S, Bergès H; International Wheat Genome Sequencing Consortium, Paux E, Fahima T, Doležel J, Korol A, Feuillet C, Keller B.

PLoS One. 2013 Nov 21;8(11):e80272. doi: 10.1371/journal.pone.0080272. eCollection 2013.

PMID:
24278269
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Flow sorting and sequencing meadow fescue chromosome 4F.

Kopecký D, Martis M, Číhalíková J, Hřibová E, Vrána J, Bartoš J, Kopecká J, Cattonaro F, Stočes Š, Novák P, Neumann P, Macas J, Šimková H, Studer B, Asp T, Baird JH, Navrátil P, Karafiátová M, Kubaláková M, Šafář J, Mayer K, Doležel J.

Plant Physiol. 2013 Nov;163(3):1323-37. doi: 10.1104/pp.113.224105. Epub 2013 Oct 4.

PMID:
24096412
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Next-generation survey sequencing and the molecular organization of wheat chromosome 6B.

Tanaka T, Kobayashi F, Joshi GP, Onuki R, Sakai H, Kanamori H, Wu J, Simkova H, Nasuda S, Endo TR, Hayakawa K, Doležel J, Ogihara Y, Itoh T, Matsumoto T, Handa H.

DNA Res. 2014;21(2):103-14. doi: 10.1093/dnares/dst041. Epub 2013 Oct 1.

PMID:
24086083
[PubMed - in process]
Free PMC Article
11.

Syntenic relationships between the U and M genomes of Aegilops, wheat and the model species Brachypodium and rice as revealed by COS markers.

Molnár I, Šimková H, Leverington-Waite M, Goram R, Cseh A, Vrána J, Farkas A, Doležel J, Molnár-Láng M, Griffiths S.

PLoS One. 2013 Aug 5;8(8):e70844. doi: 10.1371/journal.pone.0070844. Print 2013.

PMID:
23940651
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The wheat powdery mildew genome shows the unique evolution of an obligate biotroph.

Wicker T, Oberhaensli S, Parlange F, Buchmann JP, Shatalina M, Roffler S, Ben-David R, Doležel J, Šimková H, Schulze-Lefert P, Spanu PD, Bruggmann R, Amselem J, Quesneville H, Ver Loren van Themaat E, Paape T, Shimizu KK, Keller B.

Nat Genet. 2013 Sep;45(9):1092-6. doi: 10.1038/ng.2704. Epub 2013 Jul 14.

PMID:
23852167
[PubMed - indexed for MEDLINE]
13.

A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat.

Philippe R, Paux E, Bertin I, Sourdille P, Choulet F, Laugier C, Simková H, Safář J, Bellec A, Vautrin S, Frenkel Z, Cattonaro F, Magni F, Scalabrin S, Martis MM, Mayer KF, Korol A, Bergès H, Doležel J, Feuillet C.

Genome Biol. 2013 Jun 25;14(6):R64. doi: 10.1186/gb-2013-14-6-r64.

PMID:
23800011
[PubMed - in process]
Free PMC Article
14.

Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A.

Lucas SJ, Akpınar BA, Kantar M, Weinstein Z, Aydınoğlu F, Safář J, Simková H, Frenkel Z, Korol A, Magni F, Cattonaro F, Vautrin S, Bellec A, Bergès H, Doležel J, Budak H.

PLoS One. 2013 Apr 16;8(4):e59542. doi: 10.1371/journal.pone.0059542. Print 2013.

PMID:
23613713
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor.

Luo MC, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J, Chen S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie WR, Kianian SF, Martis MM, Mayer KF, Sehgal SK, Li W, Gill BS, Bevan MW, Simková H, Dolezel J, Weining S, Lazo GR, Anderson OD, Dvorak J.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7940-5. doi: 10.1073/pnas.1219082110. Epub 2013 Apr 22.

PMID:
23610408
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat.

Belova T, Zhan B, Wright J, Caccamo M, Asp T, Simková H, Kent M, Bendixen C, Panitz F, Lien S, Doležel J, Olsen OA, Sandve SR.

BMC Genomics. 2013 Apr 4;14:222. doi: 10.1186/1471-2164-14-222.

PMID:
23557231
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus.

Michalak de Jimenez MK, Bassi FM, Ghavami F, Simons K, Dizon R, Seetan RI, Alnemer LM, Denton AM, Doğramacı M, Šimková H, Doležel J, Seth K, Luo MC, Dvorak J, Gu YQ, Kianian SF.

Funct Integr Genomics. 2013 Mar;13(1):19-32. doi: 10.1007/s10142-013-0318-3. Epub 2013 Mar 12.

PMID:
23479086
[PubMed - indexed for MEDLINE]
18.

Dispersion and domestication shaped the genome of bread wheat.

Berkman PJ, Visendi P, Lee HC, Stiller J, Manoli S, Lorenc MT, Lai K, Batley J, Fleury D, Simková H, Kubaláková M, Weining S, Doležel J, Edwards D.

Plant Biotechnol J. 2013 Jun;11(5):564-71. doi: 10.1111/pbi.12044. Epub 2013 Jan 24.

PMID:
23346876
[PubMed - indexed for MEDLINE]
19.

Development of COS-SNP and HRM markers for high-throughput and reliable haplotype-based detection of Lr14a in durum wheat (Triticum durum Desf.).

Terracciano I, Maccaferri M, Bassi F, Mantovani P, Sanguineti MC, Salvi S, Simková H, Doležel J, Massi A, Ammar K, Kolmer J, Tuberosa R.

Theor Appl Genet. 2013 Apr;126(4):1077-101. doi: 10.1007/s00122-012-2038-9. Epub 2013 Jan 5.

PMID:
23292293
[PubMed - indexed for MEDLINE]
20.

Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat.

Akhunov ED, Sehgal S, Liang H, Wang S, Akhunova AR, Kaur G, Li W, Forrest KL, See D, Simková H, Ma Y, Hayden MJ, Luo M, Faris JD, Dolezel J, Gill BS.

Plant Physiol. 2013 Jan;161(1):252-65. doi: 10.1104/pp.112.205161. Epub 2012 Nov 1.

PMID:
23124323
[PubMed - indexed for MEDLINE]
Free PMC Article

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