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Items: 1 to 20 of 31

1.

Toward interoperable bioscience data.

Sansone SA, Rocca-Serra P, Field D, Maguire E, Taylor C, Hofmann O, Fang H, Neumann S, Tong W, Amaral-Zettler L, Begley K, Booth T, Bougueleret L, Burns G, Chapman B, Clark T, Coleman LA, Copeland J, Das S, de Daruvar A, de Matos P, Dix I, Edmunds S, Evelo CT, Forster MJ, Gaudet P, Gilbert J, Goble C, Griffin JL, Jacob D, Kleinjans J, Harland L, Haug K, Hermjakob H, Ho Sui SJ, Laederach A, Liang S, Marshall S, McGrath A, Merrill E, Reilly D, Roux M, Shamu CE, Shang CA, Steinbeck C, Trefethen A, Williams-Jones B, Wolstencroft K, Xenarios I, Hide W.

Nat Genet. 2012 Jan 27;44(2):121-6. doi: 10.1038/ng.1054.

2.

MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant NMR metabolomic profiles.

Ferry-Dumazet H, Gil L, Deborde C, Moing A, Bernillon S, Rolin D, Nikolski M, de Daruvar A, Jacob D.

BMC Plant Biol. 2011 Jun 13;11:104. doi: 10.1186/1471-2229-11-104.

3.

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak.

Ueno S, Le Provost G, Léger V, Klopp C, Noirot C, Frigerio JM, Salin F, Salse J, Abrouk M, Murat F, Brendel O, Derory J, Abadie P, Léger P, Cabane C, Barré A, de Daruvar A, Couloux A, Wincker P, Reviron MP, Kremer A, Plomion C.

BMC Genomics. 2010 Nov 23;11:650. doi: 10.1186/1471-2164-11-650.

4.

A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study.

Durand J, Bodénès C, Chancerel E, Frigerio JM, Vendramin G, Sebastiani F, Buonamici A, Gailing O, Koelewijn HP, Villani F, Mattioni C, Cherubini M, Goicoechea PG, Herrán A, Ikaran Z, Cabané C, Ueno S, Alberto F, Dumoulin PY, Guichoux E, de Daruvar A, Kremer A, Plomion C.

BMC Genomics. 2010 Oct 15;11:570. doi: 10.1186/1471-2164-11-570.

5.

Minimum information about a protein affinity reagent (MIAPAR).

Bourbeillon J, Orchard S, Benhar I, Borrebaeck C, de Daruvar A, Dübel S, Frank R, Gibson F, Gloriam D, Haslam N, Hiltker T, Humphrey-Smith I, Hust M, Juncker D, Koegl M, Konthur Z, Korn B, Krobitsch S, Muyldermans S, Nygren PA, Palcy S, Polic B, Rodriguez H, Sawyer A, Schlapshy M, Snyder M, Stoevesandt O, Taussig MJ, Templin M, Uhlen M, van der Maarel S, Wingren C, Hermjakob H, Sherman D.

Nat Biotechnol. 2010 Jul;28(7):650-3. doi: 10.1038/nbt0710-650. No abstract available.

PMID:
20622827
6.

An integrative genomics approach for deciphering the complex interactions between ascorbate metabolism and fruit growth and composition in tomato.

Garcia V, Stevens R, Gil L, Gilbert L, Gest N, Petit J, Faurobert M, Maucourt M, Deborde C, Moing A, Poessel JL, Jacob D, Bouchet JP, Giraudel JL, Gouble B, Page D, Alhagdow M, Massot C, Gautier H, Lemaire-Chamley M, de Daruvar A, Rolin D, Usadel B, Lahaye M, Causse M, Baldet P, Rothan C.

C R Biol. 2009 Nov;332(11):1007-21. doi: 10.1016/j.crvi.2009.09.013. Epub 2009 Oct 24.

PMID:
19909923
7.

Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas.

Pereyre S, Sirand-Pugnet P, Beven L, Charron A, Renaudin H, Barré A, Avenaud P, Jacob D, Couloux A, Barbe V, de Daruvar A, Blanchard A, Bébéar C.

PLoS Genet. 2009 Oct;5(10):e1000677. doi: 10.1371/journal.pgen.1000677. Epub 2009 Oct 9.

8.

A community standard format for the representation of protein affinity reagents.

Gloriam DE, Orchard S, Bertinetti D, Björling E, Bongcam-Rudloff E, Borrebaeck CA, Bourbeillon J, Bradbury AR, de Daruvar A, Dübel S, Frank R, Gibson TJ, Gold L, Haslam N, Herberg FW, Hiltke T, Hoheisel JD, Kerrien S, Koegl M, Konthur Z, Korn B, Landegren U, Montecchi-Palazzi L, Palcy S, Rodriguez H, Schweinsberg S, Sievert V, Stoevesandt O, Taussig MJ, Ueffing M, Uhlén M, van der Maarel S, Wingren C, Woollard P, Sherman DJ, Hermjakob H.

Mol Cell Proteomics. 2010 Jan;9(1):1-10. doi: 10.1074/mcp.M900185-MCP200. Epub 2009 Aug 11.

9.

Oenococcus oeni genome plasticity is associated with fitness.

Bon E, Delaherche A, Bilhère E, De Daruvar A, Lonvaud-Funel A, Le Marrec C.

Appl Environ Microbiol. 2009 Apr;75(7):2079-90. doi: 10.1128/AEM.02194-08. Epub 2009 Feb 13.

10.

Conference Report: The ESF Programme on Integrated Approaches for Functional Genomics. Workshop on 'Data Integration in Functional Genomics and Proteomics'.

Binz PA, Martin A, Taussig M, de Daruvar A.

Comp Funct Genomics. 2002;3(1):16-21. doi: 10.1002/cfg.134. No abstract available.

11.

RIBDB: an SRS based infrastructure for REALIS.

Rice P, Jassal B, de Daruvar A.

Comp Funct Genomics. 2002;3(1):35-6. doi: 10.1002/cfg.139.

12.

Observing metabolic functions at the genome scale.

Schwartz JM, Gaugain C, Nacher JC, de Daruvar A, Kanehisa M.

Genome Biol. 2007;8(6):R123.

13.

Large-scale identification of human genes implicated in epidermal barrier function.

Toulza E, Mattiuzzo NR, Galliano MF, Jonca N, Dossat C, Jacob D, de Daruvar A, Wincker P, Serre G, Guerrin M.

Genome Biol. 2007;8(6):R107.

14.

Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome.

Sirand-Pugnet P, Lartigue C, Marenda M, Jacob D, Barré A, Barbe V, Schenowitz C, Mangenot S, Couloux A, Segurens B, de Daruvar A, Blanchard A, Citti C.

PLoS Genet. 2007 May 18;3(5):e75.

15.

ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome.

Taussig MJ, Stoevesandt O, Borrebaeck CA, Bradbury AR, Cahill D, Cambillau C, de Daruvar A, Dübel S, Eichler J, Frank R, Gibson TJ, Gloriam D, Gold L, Herberg FW, Hermjakob H, Hoheisel JD, Joos TO, Kallioniemi O, Koegl M, Konthur Z, Korn B, Kremmer E, Krobitsch S, Landegren U, van der Maarel S, McCafferty J, Muyldermans S, Nygren PA, Palcy S, Plückthun A, Polic B, Przybylski M, Saviranta P, Sawyer A, Sherman DJ, Skerra A, Templin M, Ueffing M, Uhlén M.

Nat Methods. 2007 Jan;4(1):13-7. Erratum in: Nat Methods. 2007 Feb;4(2):187. Koegll, Manfred [corrected to Koegl, Manfred].

PMID:
17195019
16.

Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins.

Plomion C, Lalanne C, Claverol S, Meddour H, Kohler A, Bogeat-Triboulot MB, Barre A, Le Provost G, Dumazet H, Jacob D, Bastien C, Dreyer E, de Daruvar A, Guehl JM, Schmitter JM, Martin F, Bonneu M.

Proteomics. 2006 Dec;6(24):6509-27.

PMID:
17163438
17.

Intraspecific diversity of Oenococcus oeni strains determined by sequence analysis of target genes.

Delaherche A, Bon E, Dupé A, Lucas M, Arveiler B, De Daruvar A, Lonvaud-Funel A.

Appl Microbiol Biotechnol. 2006 Nov;73(2):394-403. Epub 2006 Aug 16.

PMID:
16912850
18.

The proteome of maritime pine wood forming tissue.

Gion JM, Lalanne C, Le Provost G, Ferry-Dumazet H, Paiva J, Chaumeil P, Frigerio JM, Brach J, Barré A, de Daruvar A, Claverol S, Bonneu M, Sommerer N, Negroni L, Plomion C.

Proteomics. 2005 Sep;5(14):3731-51.

PMID:
16127725
19.

PROTICdb: a web-based application to store, track, query, and compare plant proteome data.

Ferry-Dumazet H, Houel G, Montalent P, Moreau L, Langella O, Negroni L, Vincent D, Lalanne C, de Daruvar A, Plomion C, Zivy M, Joets J.

Proteomics. 2005 May;5(8):2069-81.

PMID:
15846840
20.

Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences.

Dantec LL, Chagné D, Pot D, Cantin O, Garnier-Géré P, Bedon F, Frigerio JM, Chaumeil P, Léger P, Garcia V, Laigret F, De Daruvar A, Plomion C.

Plant Mol Biol. 2004 Feb;54(3):461-70.

PMID:
15284499
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