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Results: 18

1.

Nucleotides adjacent to the ligand-binding pocket are linked to activity tuning in the purine riboswitch.

Stoddard CD, Widmann J, Trausch JJ, Marcano-Velázquez JG, Knight R, Batey RT.

J Mol Biol. 2013 May 27;425(10):1596-611. doi: 10.1016/j.jmb.2013.02.023. Epub 2013 Feb 26.

2.

RNASTAR: an RNA STructural Alignment Repository that provides insight into the evolution of natural and artificial RNAs.

Widmann J, Stombaugh J, McDonald D, Chocholousova J, Gardner P, Iyer MK, Liu Z, Lozupone CA, Quinn J, Smit S, Wikman S, Zaneveld JR, Knight R.

RNA. 2012 Jul;18(7):1319-27. doi: 10.1261/rna.032052.111. Epub 2012 May 29.

3.

Interactive versus reproductive learning, a comparison of medical school graduates with participants of a postgraduate CPD session.

Löffler S, Feja C, Widmann J, Claus I, von Lindeman K, Eisnach K.

GMS Z Med Ausbild. 2011;28(4):Doc57. doi: 10.3205/zma000769. Epub 2011 Nov 15. English, German.

4.

Human Immunodeficiency Virus nef signature sequences are associated with pulmonary hypertension.

Almodovar S, Knight R, Allshouse AA, Roemer S, Lozupone C, McDonald D, Widmann J, Voelkel NF, Shelton RJ, Suarez EB, Hammer KW, Goujard C, Petrosillo N, Simonneau G, Hsue PY, Humbert M, Flores SC.

AIDS Res Hum Retroviruses. 2012 Jun;28(6):607-18. doi: 10.1089/AID.2011.0021. Epub 2012 Jan 17.

5.

Mesenteric panniculitis presenting with acute non-occlusive colonic ischemia.

Amor F, Farsad M, Polato R, Pernter P, Widmann J, Mazzoleni G, Osele L, Wiedermann CJ.

Int Arch Med. 2011 Jun 22;4:22. doi: 10.1186/1755-7682-4-22.

6.

Boulder ALignment Editor (ALE): a web-based RNA alignment tool.

Stombaugh J, Widmann J, McDonald D, Knight R.

Bioinformatics. 2011 Jun 15;27(12):1706-7. doi: 10.1093/bioinformatics/btr258. Epub 2011 May 5.

7.

Nucleotides that are essential but not conserved; a sufficient L-tryptophan site in RNA.

Majerfeld I, Chocholousova J, Malaiya V, Widmann J, McDonald D, Reeder J, Iyer M, Illangasekare M, Yarus M, Knight R.

RNA. 2010 Oct;16(10):1915-24. doi: 10.1261/rna.2220210. Epub 2010 Aug 10.

8.

Stable tRNA-based phylogenies using only 76 nucleotides.

Widmann J, Harris JK, Lozupone C, Wolfson A, Knight R.

RNA. 2010 Aug;16(8):1469-77. doi: 10.1261/rna.726010. Epub 2010 Jun 17.

9.

QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R.

Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. No abstract available.

10.

Patient risk factors and adverse drug interactions in the treatment of acute gouty arthritis in the elderly: a case report.

Zagler B, Kaneppele A, Pattis P, Stockner I, Sitzmann G, Widmann J, Pernthaler H, Wiedermann CJ.

Cases J. 2009 Apr 28;2:6602. doi: 10.1186/1757-1626-2-6602.

11.

MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs.

Hamady M, Widmann J, Copley SD, Knight R.

Genome Biol. 2008;9(8):R128. doi: 10.1186/gb-2008-9-8-r128. Epub 2008 Aug 15.

12.

PyCogent: a toolkit for making sense from sequence.

Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, Eaton M, Hamady M, Lindsay H, Liu Z, Lozupone C, McDonald D, Robeson M, Sammut R, Smit S, Wakefield MJ, Widmann J, Wikman S, Wilson S, Ying H, Huttley GA.

Genome Biol. 2007;8(8):R171.

13.

Evolutionary rates vary among rRNA structural elements.

Smit S, Widmann J, Knight R.

Nucleic Acids Res. 2007;35(10):3339-54. Epub 2007 Apr 27.

14.

DivergentSet, a tool for picking non-redundant sequences from large sequence collections.

Widmann J, Hamady M, Knight R.

Mol Cell Proteomics. 2006 Aug;5(8):1520-32. Epub 2006 Jun 11.

15.

tRNA creation by hairpin duplication.

Widmann J, Di Giulio M, Yarus M, Knight R.

J Mol Evol. 2005 Oct;61(4):524-30. Epub 2005 Sep 12.

PMID:
16155749
16.

Tensor fasciae latae perforator flap for reconstruction of composite Achilles tendon defects with skin and vascularized fascia.

Deiler S, Pfadenhauer A, Widmann J, Stützle H, Kanz KG, Stock W.

Plast Reconstr Surg. 2000 Aug;106(2):342-9.

PMID:
10946933
17.

Treatment of bronchopleural fistula after pneumonectomy by using an omental pedicle.

Martini G, Widmann J, Perkmann R, Steger K.

Chest. 1994 Mar;105(3):957-9.

PMID:
8131579
18.

[DNA content of spermatozoa in teratospermia].

Leidl W, Stolla R, Botzenhardt A, Widmann J.

Dtsch Tierarztl Wochenschr. 1974 Feb 15;81(4):81-3. German. No abstract available.

PMID:
4596258
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