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Mirror, mirror on the wall: which microbiomes will help heal them all?

Nayak RR, Turnbaugh PJ.

BMC Med. 2016 May 4;14(1):72. doi: 10.1186/s12916-016-0622-6.


The microbial pharmacists within us: a metagenomic view of xenobiotic metabolism.

Spanogiannopoulos P, Bess EN, Carmody RN, Turnbaugh PJ.

Nat Rev Microbiol. 2016 May;14(5):273-87. doi: 10.1038/nrmicro.2016.17. Epub 2016 Mar 14.


Siri, What Should I Eat?

Jumpertz von Schwartzenberg R, Turnbaugh PJ.

Cell. 2015 Nov 19;163(5):1051-2. doi: 10.1016/j.cell.2015.11.012.


Marked seasonal variation in the wild mouse gut microbiota.

Maurice CF, Knowles SC, Ladau J, Pollard KS, Fenton A, Pedersen AB, Turnbaugh PJ.

ISME J. 2015 Nov;9(11):2423-34. doi: 10.1038/ismej.2015.53. Epub 2015 May 29.


Gut microbial succession follows acute secretory diarrhea in humans.

David LA, Weil A, Ryan ET, Calderwood SB, Harris JB, Chowdhury F, Begum Y, Qadri F, LaRocque RC, Turnbaugh PJ.

MBio. 2015 May 19;6(3):e00381-15. doi: 10.1128/mBio.00381-15.


Characterization and detection of a widely distributed gene cluster that predicts anaerobic choline utilization by human gut bacteria.

Martínez-del Campo A, Bodea S, Hamer HA, Marks JA, Haiser HJ, Turnbaugh PJ, Balskus EP.

MBio. 2015 Apr 14;6(2). pii: e00042-15. doi: 10.1128/mBio.00042-15.


Dietary Polyphenols Promote Growth of the Gut Bacterium Akkermansia muciniphila and Attenuate High-Fat Diet-Induced Metabolic Syndrome.

Roopchand DE, Carmody RN, Kuhn P, Moskal K, Rojas-Silva P, Turnbaugh PJ, Raskin I.

Diabetes. 2015 Aug;64(8):2847-58. doi: 10.2337/db14-1916. Epub 2015 Apr 6.


Functional characterization of bacteria isolated from ancient arctic soil exposes diverse resistance mechanisms to modern antibiotics.

Perron GG, Whyte L, Turnbaugh PJ, Goordial J, Hanage WP, Dantas G, Desai MM.

PLoS One. 2015 Mar 25;10(3):e0069533. doi: 10.1371/journal.pone.0069533. eCollection 2015.


Diet dominates host genotype in shaping the murine gut microbiota.

Carmody RN, Gerber GK, Luevano JM Jr, Gatti DM, Somes L, Svenson KL, Turnbaugh PJ.

Cell Host Microbe. 2015 Jan 14;17(1):72-84. doi: 10.1016/j.chom.2014.11.010. Epub 2014 Dec 18.


Rapid fucosylation of intestinal epithelium sustains host-commensal symbiosis in sickness.

Pickard JM, Maurice CF, Kinnebrew MA, Abt MC, Schenten D, Golovkina TV, Bogatyrev SR, Ismagilov RF, Pamer EG, Turnbaugh PJ, Chervonsky AV.

Nature. 2014 Oct 30;514(7524):638-41. doi: 10.1038/nature13823. Epub 2014 Oct 1.


Microbial determinants of biochemical individuality and their impact on toxicology and pharmacology.

Patterson AD, Turnbaugh PJ.

Cell Metab. 2014 Nov 4;20(5):761-8. doi: 10.1016/j.cmet.2014.07.002. Epub 2014 Aug 21.


Host-microbial interactions in the metabolism of therapeutic and diet-derived xenobiotics.

Carmody RN, Turnbaugh PJ.

J Clin Invest. 2014 Oct;124(10):4173-81. doi: 10.1172/JCI72335. Epub 2014 Aug 8. Review.


Mechanistic insight into digoxin inactivation by Eggerthella lenta augments our understanding of its pharmacokinetics.

Haiser HJ, Seim KL, Balskus EP, Turnbaugh PJ.

Gut Microbes. 2014 Mar-Apr;5(2):233-8. doi: 10.4161/gmic.27915. Epub 2014 Jan 23.


The intestinal metabolome: an intersection between microbiota and host.

Ursell LK, Haiser HJ, Van Treuren W, Garg N, Reddivari L, Vanamala J, Dorrestein PC, Turnbaugh PJ, Knight R.

Gastroenterology. 2014 May;146(6):1470-6. doi: 10.1053/j.gastro.2014.03.001. Epub 2014 Mar 11. Review.


Diet rapidly and reproducibly alters the human gut microbiome.

David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, Biddinger SB, Dutton RJ, Turnbaugh PJ.

Nature. 2014 Jan 23;505(7484):559-63. doi: 10.1038/nature12820. Epub 2013 Dec 11.


High-resolution microbial community reconstruction by integrating short reads from multiple 16S rRNA regions.

Amir A, Zeisel A, Zuk O, Elgart M, Stern S, Shamir O, Turnbaugh PJ, Soen Y, Shental N.

Nucleic Acids Res. 2013 Dec;41(22):e205. doi: 10.1093/nar/gkt1070. Epub 2013 Nov 7.


Quantifying and identifying the active and damaged subsets of indigenous microbial communities.

Maurice CF, Turnbaugh PJ.

Methods Enzymol. 2013;531:91-107. doi: 10.1016/B978-0-12-407863-5.00005-8.


Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta.

Haiser HJ, Gootenberg DB, Chatman K, Sirasani G, Balskus EP, Turnbaugh PJ.

Science. 2013 Jul 19;341(6143):295-8. doi: 10.1126/science.1235872.


Cancer: An acidic link.

Devkota S, Turnbaugh PJ.

Nature. 2013 Jul 4;499(7456):37-8. doi: 10.1038/nature12404. Epub 2013 Jun 26. No abstract available.


Quantifying the metabolic activities of human-associated microbial communities across multiple ecological scales.

Maurice CF, Turnbaugh PJ.

FEMS Microbiol Rev. 2013 Sep;37(5):830-48. doi: 10.1111/1574-6976.12022. Epub 2013 Apr 22. Review.

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