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Results: 12

1.

Bacteria from diverse habitats colonize and compete in the mouse gut.

Seedorf H, Griffin NW, Ridaura VK, Reyes A, Cheng J, Rey FE, Smith MI, Simon GM, Scheffrahn RH, Woebken D, Spormann AM, Van Treuren W, Ursell LK, Pirrung M, Robbins-Pianka A, Cantarel BL, Lombard V, Henrissat B, Knight R, Gordon JI.

Cell. 2014 Oct 9;159(2):253-66. doi: 10.1016/j.cell.2014.09.008. Epub 2014 Oct 2.

PMID:
25284151
[PubMed - in process]
2.

EMPeror: a tool for visualizing high-throughput microbial community data.

Vázquez-Baeza Y, Pirrung M, Gonzalez A, Knight R.

Gigascience. 2013 Nov 26;2(1):16. doi: 10.1186/2047-217X-2-16.

PMID:
24280061
[PubMed]
Free PMC Article
3.

Replenishing our defensive microbes.

Ursell LK, Van Treuren W, Metcalf JL, Pirrung M, Gewirtz A, Knight R.

Bioessays. 2013 Sep;35(9):810-7. doi: 10.1002/bies.201300018. Epub 2013 Jul 8. Review.

PMID:
23836415
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.

Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, Mirarab S, Rosenberg MS, Balhoff JP, Bik HM, Heath TA, Midford PE, Brown JW, McTavish EJ, Sukumaran J, Westneat M, Alfaro ME, Steele A, Jordan G.

BMC Bioinformatics. 2013 May 13;14:158. doi: 10.1186/1471-2105-14-158.

PMID:
23668630
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Evidence for a persistent microbial seed bank throughout the global ocean.

Gibbons SM, Caporaso JG, Pirrung M, Field D, Knight R, Gilbert JA.

Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):4651-5. doi: 10.1073/pnas.1217767110. Epub 2013 Mar 4.

PMID:
23487761
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata.

Pirrung M, Kennedy R, Caporaso JG, Stombaugh J, Wendel D, Knight R.

Bioinformatics. 2011 Nov 1;27(21):3067-9. doi: 10.1093/bioinformatics/btr517. Epub 2011 Sep 8.

PMID:
21903626
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R.

Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. No abstract available.

PMID:
20383131
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Preparation of methyl ester precursors of biologically active agents.

Zou Y, Rojas-Pierce M, Raikhel N, Pirrung M.

Biotechniques. 2008 Mar;44(3):377-84. doi: 10.2144/000112704.

PMID:
18361791
[PubMed - indexed for MEDLINE]
Free Article
9.

Adding precision tools to the plant biologists' toolbox with chemical genomics.

Raikhel N, Pirrung M.

Plant Physiol. 2005 Jun;138(2):563-4. Review. No abstract available.

PMID:
15955916
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Benzo[c]phenanthrene adducts and nogalamycin inhibit DNA transesterification by vaccinia topoisomerase.

Yakovleva L, Handy CJ, Sayer JM, Pirrung M, Jerina DM, Shuman S.

J Biol Chem. 2004 May 28;279(22):23335-42. Epub 2004 Mar 23.

PMID:
15044474
[PubMed - indexed for MEDLINE]
Free Article
11.

Antibacterial agents that target lipid A biosynthesis in gram-negative bacteria. Inhibition of diverse UDP-3-O-(r-3-hydroxymyristoyl)-n-acetylglucosamine deacetylases by substrate analogs containing zinc binding motifs.

Jackman JE, Fierke CA, Tumey LN, Pirrung M, Uchiyama T, Tahir SH, Hindsgaul O, Raetz CR.

J Biol Chem. 2000 Apr 14;275(15):11002-9.

PMID:
10753902
[PubMed - indexed for MEDLINE]
Free Article
12.

The infection that eats patients alive.

Ruth-Sahd LA, Pirrung M.

RN. 1997 Mar;60(3):28-34; quiz 35. Review. No abstract available.

PMID:
9122590
[PubMed - indexed for MEDLINE]

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