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Results: 1 to 20 of 211

1.

HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data.

Nariai N, Kojima K, Saito S, Mimori T, Sato Y, Kawai Y, Yamaguchi-Kabata Y, Yasuda J, Nagasaki M.

BMC Genomics. 2015;16 Suppl 2:S7. doi: 10.1186/1471-2164-16-S2-S7. Epub 2015 Jan 21.

PMID:
25708870
[PubMed - in process]
Free Article
2.

Estimating copy numbers of alleles from population-scale high-throughput sequencing data.

Mimori T, Nariai N, Kojima K, Sato Y, Kawai Y, Yamaguchi-Kabata Y, Nagasaki M.

BMC Bioinformatics. 2015;16(Suppl 1):S4. doi: 10.1186/1471-2105-16-S1-S4. Epub 2015 Jan 21.

PMID:
25707811
[PubMed - in process]
Free Article
3.

TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads.

Nariai N, Kojima K, Mimori T, Sato Y, Kawai Y, Yamaguchi-Kabata Y, Nagasaki M.

BMC Genomics. 2014;15 Suppl 10:S5. doi: 10.1186/1471-2164-15-S10-S5. Epub 2014 Dec 12.

PMID:
25560536
[PubMed - in process]
Free PMC Article
4.

Repeated high intensity bouts with long recovery: are bicarbonate or carbohydrate supplements an option?

Stöggl T, Torres-Peralta R, Cetin E, Nagasaki M.

ScientificWorldJournal. 2014;2014:145747. doi: 10.1155/2014/145747. Epub 2014 Nov 10.

PMID:
25431775
[PubMed - in process]
Free PMC Article
5.

An efficient quantitation method of next-generation sequencing libraries by using MiSeq sequencer.

Katsuoka F, Yokozawa J, Tsuda K, Ito S, Pan X, Nagasaki M, Yasuda J, Yamamoto M.

Anal Biochem. 2014 Dec 1;466:27-9. doi: 10.1016/j.ab.2014.08.015. Epub 2014 Aug 28.

PMID:
25173513
[PubMed - in process]
6.

Revisiting the bromination of C-H bonds with molecular bromine by using a photo-microflow system.

Manabe Y, Kitawaki Y, Nagasaki M, Fukase K, Matsubara H, Hino Y, Fukuyama T, Ryu I.

Chemistry. 2014 Sep 26;20(40):12750-3. doi: 10.1002/chem.201402303. Epub 2014 Aug 29.

PMID:
25170976
[PubMed - in process]
7.

Inference of gene regulatory networks incorporating multi-source biological knowledge via a state space model with L1 regularization.

Hasegawa T, Yamaguchi R, Nagasaki M, Miyano S, Imoto S.

PLoS One. 2014 Aug 27;9(8):e105942. doi: 10.1371/journal.pone.0105942. eCollection 2014.

PMID:
25162401
[PubMed - in process]
Free PMC Article
8.

Validation of multiple single nucleotide variation calls by additional exome analysis with a semiconductor sequencer to supplement data of whole-genome sequencing of a human population.

Motoike IN, Matsumoto M, Danjoh I, Katsuoka F, Kojima K, Nariai N, Sato Y, Yamaguchi-Kabata Y, Ito S, Kudo H, Nishijima I, Nishikawa S, Pan X, Saito R, Saito S, Saito T, Shirota M, Tsuda K, Yokozawa J, Igarashi K, Minegishi N, Tanabe O, Fuse N, Nagasaki M, Kinoshita K, Yasuda J, Yamamoto M.

BMC Genomics. 2014 Aug 10;15:673. doi: 10.1186/1471-2164-15-673.

PMID:
25109789
[PubMed - in process]
Free PMC Article
9.

SUGAR: graphical user interface-based data refiner for high-throughput DNA sequencing.

Sato Y, Kojima K, Nariai N, Yamaguchi-Kabata Y, Kawai Y, Takahashi M, Mimori T, Nagasaki M.

BMC Genomics. 2014 Aug 8;15:664. doi: 10.1186/1471-2164-15-664.

PMID:
25103311
[PubMed - in process]
Free PMC Article
10.

Clinical development and trial design of biosimilar products: a Japanese perspective.

Nagasaki M, Ando Y.

J Biopharm Stat. 2014;24(6):1165-72. doi: 10.1080/10543406.2014.941983.

PMID:
25033370
[PubMed - in process]
11.

ENPP2 contributes to adipose tissue expansion and insulin resistance in diet-induced obesity.

Nishimura S, Nagasaki M, Okudaira S, Aoki J, Ohmori T, Ohkawa R, Nakamura K, Igarashi K, Yamashita H, Eto K, Uno K, Hayashi N, Kadowaki T, Komuro I, Yatomi Y, Nagai R.

Diabetes. 2014 Dec;63(12):4154-64. doi: 10.2337/db13-1694. Epub 2014 Jun 26.

PMID:
24969110
[PubMed - indexed for MEDLINE]
12.

An efficient method of exploring simulation models by assimilating literature and biological observational data.

Hasegawa T, Nagasaki M, Yamaguchi R, Imoto S, Miyano S.

Biosystems. 2014 Jul;121:54-66. doi: 10.1016/j.biosystems.2014.06.001. Epub 2014 Jun 5.

PMID:
24907678
[PubMed - in process]
13.

CSML2SBML: a novel tool for converting quantitative biological pathway models from CSML into SBML.

Li C, Nagasaki M, Ikeda E, Sekiya Y, Miyano S.

Biosystems. 2014 Jul;121:22-8. doi: 10.1016/j.biosystems.2014.05.004. Epub 2014 Jun 2.

PMID:
24881961
[PubMed - in process]
14.

Identification of acquired mutations by whole-genome sequencing in GATA-2 deficiency evolving into myelodysplasia and acute leukemia.

Fujiwara T, Fukuhara N, Funayama R, Nariai N, Kamata M, Nagashima T, Kojima K, Onishi Y, Sasahara Y, Ishizawa K, Nagasaki M, Nakayama K, Harigae H.

Ann Hematol. 2014 Sep;93(9):1515-22. doi: 10.1007/s00277-014-2090-4. Epub 2014 Apr 30.

PMID:
24782121
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data.

Mimori T, Nariai N, Kojima K, Takahashi M, Ono A, Sato Y, Yamaguchi-Kabata Y, Nagasaki M.

BMC Syst Biol. 2013;7 Suppl 6:S8. doi: 10.1186/1752-0509-7-S6-S8. Epub 2013 Dec 13.

PMID:
24564972
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Adipose Natural Regulatory B Cells Negatively Control Adipose Tissue Inflammation.

Nishimura S, Manabe I, Takaki S, Nagasaki M, Otsu M, Yamashita H, Sugita J, Yoshimura K, Eto K, Komuro I, Kadowaki T, Nagai R.

Cell Metab. 2013 Oct 22. pii: S1550-4131(13)00386-0. doi: 10.1016/j.cmet.2013.09.017. [Epub ahead of print]

PMID:
24209772
[PubMed - as supplied by publisher]
Free Article
17.

Involvement of heparan sulfate in the renoprotective effects of imidapril, an angiotensin-converting enzyme inhibitor, in diabetic db/db mice.

Yoneda H, Ueta K, Nagasaki M, Arakawa K.

J Recept Signal Transduct Res. 2014 Feb;34(1):21-5. doi: 10.3109/10799893.2013.845788. Epub 2013 Oct 4.

PMID:
24094140
[PubMed - indexed for MEDLINE]
18.

Profiling of microRNA in human and mouse ES and iPS cells reveals overlapping but distinct microRNA expression patterns.

Razak SR, Ueno K, Takayama N, Nariai N, Nagasaki M, Saito R, Koso H, Lai CY, Murakami M, Tsuji K, Michiue T, Nakauchi H, Otsu M, Watanabe S.

PLoS One. 2013 Sep 23;8(9):e73532. doi: 10.1371/journal.pone.0073532. eCollection 2013.

PMID:
24086284
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.

Kojima K, Nariai N, Mimori T, Takahashi M, Yamaguchi-Kabata Y, Sato Y, Nagasaki M.

Bioinformatics. 2013 Nov 15;29(22):2835-43. doi: 10.1093/bioinformatics/btt503. Epub 2013 Sep 3.

PMID:
24002111
[PubMed - indexed for MEDLINE]
Free Article
20.

Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms.

Kon A, Shih LY, Minamino M, Sanada M, Shiraishi Y, Nagata Y, Yoshida K, Okuno Y, Bando M, Nakato R, Ishikawa S, Sato-Otsubo A, Nagae G, Nishimoto A, Haferlach C, Nowak D, Sato Y, Alpermann T, Nagasaki M, Shimamura T, Tanaka H, Chiba K, Yamamoto R, Yamaguchi T, Otsu M, Obara N, Sakata-Yanagimoto M, Nakamaki T, Ishiyama K, Nolte F, Hofmann WK, Miyawaki S, Chiba S, Mori H, Nakauchi H, Koeffler HP, Aburatani H, Haferlach T, Shirahige K, Miyano S, Ogawa S.

Nat Genet. 2013 Oct;45(10):1232-7. doi: 10.1038/ng.2731. Epub 2013 Aug 18.

PMID:
23955599
[PubMed - indexed for MEDLINE]
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