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Results: 1 to 20 of 65

1.

Identifying qualitative effects of different grazing types on below-ground communities and function in a long-term field experiment.

Macdonald CA, Crawley MJ, Wright DJ, Kuczynski J, Robinson L, Knight R, Al-Soud WA, Sørensen SJ, Deng Y, Zhou J, Singh BK.

Environ Microbiol. 2014 Jun 16. doi: 10.1111/1462-2920.12539. [Epub ahead of print]

PMID:
24935069
[PubMed - as supplied by publisher]
2.

Changes in abundance of oral microbiota associated with oral cancer.

Schmidt BL, Kuczynski J, Bhattacharya A, Huey B, Corby PM, Queiroz EL, Nightingale K, Kerr AR, DeLacure MD, Veeramachaneni R, Olshen AB, Albertson DG; Muy-Teck Teh.

PLoS One. 2014 Jun 2;9(6):e98741. doi: 10.1371/journal.pone.0098741. eCollection 2014.

PMID:
24887397
[PubMed - in process]
Free PMC Article
3.

Comparative genomics of the Bifidobacterium breve taxon.

Bottacini F, O'Connell Motherway M, Kuczynski J, O'Connell KJ, Serafini F, Duranti S, Milani C, Turroni F, Lugli GA, Zomer A, Zhurina D, Riedel C, Ventura M, van Sinderen D.

BMC Genomics. 2014 Mar 1;15:170. doi: 10.1186/1471-2164-15-170.

PMID:
24581150
[PubMed - in process]
Free PMC Article
4.

Murine norovirus infection does not cause major disruptions in the murine intestinal microbiota.

Nelson AM, Elftman MD, Pinto AK, Baldridge M, Hooper P, Kuczynski J, Petrosino JF, Young VB, Wobus CE.

Microbiome. 2013 Feb 18;1(1):7. doi: 10.1186/2049-2618-1-7.

PMID:
24451302
[PubMed]
5.

New observations on procoagulant properties of amniotic fluid: microparticles (MPs) and tissue factor-bearing MPs (MPs-TF), comparison with maternal blood plasma.

Uszyński W, Zekanowska E, Uszyński M, Zyliński A, Kuczyński J.

Thromb Res. 2013 Dec;132(6):757-60. doi: 10.1016/j.thromres.2013.10.001. Epub 2013 Oct 11.

PMID:
24157083
[PubMed - in process]
6.

[Bayesian network as a tool to study health behaviors of students from selected schools of Suwalki, Bialystok and Grodno].

Kuczyński J, Kleszczewska E, Łogwiniuk K, Szpakow A, Szpakow A.

Przegl Lek. 2012;69(10):924-8. Polish.

PMID:
23421062
[PubMed - indexed for MEDLINE]
7.

A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis.

Noval Rivas M, Burton OT, Wise P, Zhang YQ, Hobson SA, Garcia Lloret M, Chehoud C, Kuczynski J, DeSantis T, Warrington J, Hyde ER, Petrosino JF, Gerber GK, Bry L, Oettgen HC, Mazmanian SK, Chatila TA.

J Allergy Clin Immunol. 2013 Jan;131(1):201-12. doi: 10.1016/j.jaci.2012.10.026. Epub 2012 Nov 30.

PMID:
23201093
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Using QIIME to analyze 16S rRNA gene sequences from microbial communities.

Kuczynski J, Stombaugh J, Walters WA, González A, Caporaso JG, Knight R.

Curr Protoc Microbiol. 2012 Nov;Chapter 1:Unit 1E.5.. doi: 10.1002/9780471729259.mc01e05s27.

PMID:
23184592
[PubMed - indexed for MEDLINE]
9.

Human gut microbiome viewed across age and geography.

Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, Lozupone CA, Lauber C, Clemente JC, Knights D, Knight R, Gordon JI.

Nature. 2012 May 9;486(7402):222-7. doi: 10.1038/nature11053.

PMID:
22699611
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome.

McDonald D, Clemente JC, Kuczynski J, Rideout JR, Stombaugh J, Wendel D, Wilke A, Huse S, Hufnagle J, Meyer F, Knight R, Caporaso JG.

Gigascience. 2012 Jul 12;1(1):7. doi: 10.1186/2047-217X-1-7.

PMID:
23587224
[PubMed]
Free PMC Article
11.

Experimental and analytical tools for studying the human microbiome.

Kuczynski J, Lauber CL, Walters WA, Parfrey LW, Clemente JC, Gevers D, Knight R.

Nat Rev Genet. 2011 Dec 16;13(1):47-58. doi: 10.1038/nrg3129. Review.

PMID:
22179717
[PubMed - indexed for MEDLINE]
12.

Using QIIME to analyze 16S rRNA gene sequences from microbial communities.

Kuczynski J, Stombaugh J, Walters WA, González A, Caporaso JG, Knight R.

Curr Protoc Bioinformatics. 2011 Dec;Chapter 10:Unit 10.7.. doi: 10.1002/0471250953.bi1007s36.

PMID:
22161565
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation.

Zaneveld JR, Parfrey LW, Van Treuren W, Lozupone C, Clemente JC, Knights D, Stombaugh J, Kuczynski J, Knight R.

Trends Microbiol. 2011 Oct;19(10):472-82. doi: 10.1016/j.tim.2011.07.006. Epub 2011 Aug 25. Review.

PMID:
21872475
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Bayesian community-wide culture-independent microbial source tracking.

Knights D, Kuczynski J, Charlson ES, Zaneveld J, Mozer MC, Collman RG, Bushman FD, Knight R, Kelley ST.

Nat Methods. 2011 Jul 17;8(9):761-3. doi: 10.1038/nmeth.1650.

PMID:
21765408
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Risk factors for progression of low-grade dysplasia in patients with Barrett's esophagus.

Wani S, Falk GW, Post J, Yerian L, Hall M, Wang A, Gupta N, Gaddam S, Singh M, Singh V, Chuang KY, Boolchand V, Gavini H, Kuczynski J, Sud P, Bansal A, Rastogi A, Mathur SC, Young P, Cash B, Goldblum J, Lieberman DA, Sampliner RE, Sharma P.

Gastroenterology. 2011 Oct;141(4):1179-86, 1186.e1. doi: 10.1053/j.gastro.2011.06.055. Epub 2011 Jun 30.

PMID:
21723218
[PubMed - indexed for MEDLINE]
16.

Microparticles (MPs), tissue factor (TF) and tissue factor inhibitor (TFPI) in cord blood plasma. A preliminary study and literature survey of procoagulant properties of MPs.

Uszyński M, Zekanowska E, Uszyński W, Kuczyński J, Zyliński A.

Eur J Obstet Gynecol Reprod Biol. 2011 Sep;158(1):37-41. doi: 10.1016/j.ejogrb.2011.04.026. Epub 2011 Jun 12. Review.

PMID:
21664032
[PubMed - indexed for MEDLINE]
17.

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans.

Muegge BD, Kuczynski J, Knights D, Clemente JC, González A, Fontana L, Henrissat B, Knight R, Gordon JI.

Science. 2011 May 20;332(6032):970-4. doi: 10.1126/science.1198719.

PMID:
21596990
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO.

Nat Biotechnol. 2011 May;29(5):415-20. doi: 10.1038/nbt.1823.

PMID:
21552244
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

High-Transmission-Efficiency and Side-Viewing Micro OIDRS Probe for Fast and Minimally-Invasive Tumor Margin Detection.

Garcia-Uribe A, Chang CC, Yapici MK, Zou J, Banerjee B, Kuczynski J, Ong E, Marner ES, Wang LV.

IEEE Sens J. 2011 Apr 1;11(4):891-896.

PMID:
21479115
[PubMed]
Free PMC Article
20.

Patients with nondysplastic Barrett's esophagus have low risks for developing dysplasia or esophageal adenocarcinoma.

Wani S, Falk G, Hall M, Gaddam S, Wang A, Gupta N, Singh M, Singh V, Chuang KY, Boolchand V, Gavini H, Kuczynski J, Sud P, Reddymasu S, Bansal A, Rastogi A, Mathur SC, Young P, Cash B, Lieberman DA, Sampliner RE, Sharma P.

Clin Gastroenterol Hepatol. 2011 Mar;9(3):220-7; quiz e26. doi: 10.1016/j.cgh.2010.11.008. Epub 2010 Nov 27.

PMID:
21115133
[PubMed - indexed for MEDLINE]

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