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Results: 1 to 20 of 31

1.

Conducting a microbiome study.

Goodrich JK, Di Rienzi SC, Poole AC, Koren O, Walters WA, Caporaso JG, Knight R, Ley RE.

Cell. 2014 Jul 17;158(2):250-62. doi: 10.1016/j.cell.2014.06.037.

PMID:
25036628
[PubMed - in process]
2.

Reprogrammed and transmissible intestinal microbiota confer diminished susceptibility to induced colitis in TMF-/- mice.

Bel S, Elkis Y, Elifantz H, Koren O, Ben-Hamo R, Lerer-Goldshtein T, Rahimi R, Ben Horin S, Nyska A, Shpungin S, Nir U.

Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4964-9. doi: 10.1073/pnas.1319114111. Epub 2014 Mar 17.

PMID:
24639530
[PubMed - indexed for MEDLINE]
3.

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria.

Di Rienzi SC, Sharon I, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield JF, Ley RE.

Elife. 2013 Oct 1;2:e01102. doi: 10.7554/eLife.01102.

4.

AIEC pathobiont instigates chronic colitis in susceptible hosts by altering microbiota composition.

Chassaing B, Koren O, Carvalho FA, Ley RE, Gewirtz AT.

Gut. 2014 Jul;63(7):1069-80. doi: 10.1136/gutjnl-2013-304909. Epub 2013 Jul 29.

PMID:
23896971
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Diversity and heritability of the maize rhizosphere microbiome under field conditions.

Peiffer JA, Spor A, Koren O, Jin Z, Tringe SG, Dangl JL, Buckler ES, Ley RE.

Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6548-53. doi: 10.1073/pnas.1302837110. Epub 2013 Apr 1.

PMID:
23576752
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets.

Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, Huttenhower C, Ley RE.

PLoS Comput Biol. 2013;9(1):e1002863. doi: 10.1371/journal.pcbi.1002863. Epub 2013 Jan 10.

PMID:
23326225
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice.

Carvalho FA, Koren O, Goodrich JK, Johansson ME, Nalbantoglu I, Aitken JD, Su Y, Chassaing B, Walters WA, González A, Clemente JC, Cullender TC, Barnich N, Darfeuille-Michaud A, Vijay-Kumar M, Knight R, Ley RE, Gewirtz AT.

Cell Host Microbe. 2012 Aug 16;12(2):139-52. doi: 10.1016/j.chom.2012.07.004. Epub 2012 Aug 2.

PMID:
22863420
[PubMed - indexed for MEDLINE]
Free Article
8.

Host remodeling of the gut microbiome and metabolic changes during pregnancy.

Koren O, Goodrich JK, Cullender TC, Spor A, Laitinen K, Bäckhed HK, Gonzalez A, Werner JJ, Angenent LT, Knight R, Bäckhed F, Isolauri E, Salminen S, Ley RE.

Cell. 2012 Aug 3;150(3):470-80. doi: 10.1016/j.cell.2012.07.008.

PMID:
22863002
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The effects of bovine necrotic vulvo-vaginitis on reproductive and production performance of Israeli 1st calf heifers.

Goshen T, Ben-Gera J, Koren O, Bdolah-Abram T, Elad D.

Theriogenology. 2012 Apr 1;77(6):1178-85. doi: 10.1016/j.theriogenology.2011.10.024. Epub 2012 Jan 5.

PMID:
22225696
[PubMed - indexed for MEDLINE]
10.

Branched chain fatty acids reduce the incidence of necrotizing enterocolitis and alter gastrointestinal microbial ecology in a neonatal rat model.

Ran-Ressler RR, Khailova L, Arganbright KM, Adkins-Rieck CK, Jouni ZE, Koren O, Ley RE, Brenna JT, Dvorak B.

PLoS One. 2011;6(12):e29032. doi: 10.1371/journal.pone.0029032. Epub 2011 Dec 14.

PMID:
22194981
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88.

Larsson E, Tremaroli V, Lee YS, Koren O, Nookaew I, Fricker A, Nielsen J, Ley RE, Bäckhed F.

Gut. 2012 Aug;61(8):1124-31. doi: 10.1136/gutjnl-2011-301104. Epub 2011 Nov 23.

PMID:
22115825
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine.

Vaishnava S, Yamamoto M, Severson KM, Ruhn KA, Yu X, Koren O, Ley R, Wakeland EK, Hooper LV.

Science. 2011 Oct 14;334(6053):255-8. doi: 10.1126/science.1209791.

PMID:
21998396
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys.

Werner JJ, Koren O, Hugenholtz P, DeSantis TZ, Walters WA, Caporaso JG, Angenent LT, Knight R, Ley RE.

ISME J. 2012 Jan;6(1):94-103. doi: 10.1038/ismej.2011.82. Epub 2011 Jun 30.

PMID:
21716311
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Interleukin-1β (IL-1β) promotes susceptibility of Toll-like receptor 5 (TLR5) deficient mice to colitis.

Carvalho FA, Nalbantoglu I, Ortega-Fernandez S, Aitken JD, Su Y, Koren O, Walters WA, Knight R, Ley RE, Vijay-Kumar M, Gewirtz AT.

Gut. 2012 Mar;61(3):373-84. doi: 10.1136/gut.2011.240556. Epub 2011 Jun 5.

PMID:
21646247
[PubMed - indexed for MEDLINE]
15.

Responses of gut microbiota to diet composition and weight loss in lean and obese mice.

Ravussin Y, Koren O, Spor A, LeDuc C, Gutman R, Stombaugh J, Knight R, Ley RE, Leibel RL.

Obesity (Silver Spring). 2012 Apr;20(4):738-47. doi: 10.1038/oby.2011.111. Epub 2011 May 19.

PMID:
21593810
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO.

Nat Biotechnol. 2011 May;29(5):415-20. doi: 10.1038/nbt.1823.

PMID:
21552244
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Unravelling the effects of the environment and host genotype on the gut microbiome.

Spor A, Koren O, Ley R.

Nat Rev Microbiol. 2011 Apr;9(4):279-90. doi: 10.1038/nrmicro2540. Review.

PMID:
21407244
[PubMed - indexed for MEDLINE]
18.

Human oral, gut, and plaque microbiota in patients with atherosclerosis.

Koren O, Spor A, Felin J, Fåk F, Stombaugh J, Tremaroli V, Behre CJ, Knight R, Fagerberg B, Ley RE, Bäckhed F.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4592-8. doi: 10.1073/pnas.1011383107. Epub 2010 Oct 11.

PMID:
20937873
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Supervised classification of microbiota mitigates mislabeling errors.

Knights D, Kuczynski J, Koren O, Ley RE, Field D, Knight R, DeSantis TZ, Kelley ST.

ISME J. 2011 Apr;5(4):570-3. doi: 10.1038/ismej.2010.148. Epub 2010 Oct 7. No abstract available.

PMID:
20927137
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Epistasis in natural populations of a predominantly selfing plant.

Volis S, Shulgina I, Zaretsky M, Koren O.

Heredity (Edinb). 2011 Feb;106(2):300-9. doi: 10.1038/hdy.2010.79. Epub 2010 Jun 16.

PMID:
20551977
[PubMed - indexed for MEDLINE]
Free PMC Article

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