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Results: 1 to 20 of 34

1.

The treatment-naive microbiome in new-onset Crohn's disease.

Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, Haberman Y, Walters T, Baker S, Rosh J, Stephens M, Heyman M, Markowitz J, Baldassano R, Griffiths A, Sylvester F, Mack D, Kim S, Crandall W, Hyams J, Huttenhower C, Knight R, Xavier RJ.

Cell Host Microbe. 2014 Mar 12;15(3):382-92. doi: 10.1016/j.chom.2014.02.005.

PMID:
24629344
[PubMed - in process]
2.

The Liverpool Care Pathway for the dying: what went wrong?

Knights D, Wood D, Barclay S.

Br J Gen Pract. 2013 Oct;63(615):509-10. doi: 10.3399/bjgp13X673559. No abstract available.

PMID:
24152449
[PubMed - indexed for MEDLINE]
3.

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system.

Metcalf JL, Wegener Parfrey L, Gonzalez A, Lauber CL, Knights D, Ackermann G, Humphrey GC, Gebert MJ, Van Treuren W, Berg-Lyons D, Keepers K, Guo Y, Bullard J, Fierer N, Carter DO, Knight R.

Elife (Cambridge). 2013 Oct 15;2:e01104. doi: 10.7554/eLife.01104.

PMID:
24137541
[PubMed]
Free PMC Article
4.

Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome.

Knights D, Lassen KG, Xavier RJ.

Gut. 2013 Oct;62(10):1505-10. doi: 10.1136/gutjnl-2012-303954. Review.

PMID:
24037875
[PubMed - indexed for MEDLINE]
5.

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.

Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C.

Nat Biotechnol. 2013 Sep;31(9):814-21. doi: 10.1038/nbt.2676. Epub 2013 Aug 25.

PMID:
23975157
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Anal gas evacuation and colonic microbiota in patients with flatulence: effect of diet.

Manichanh C, Eck A, Varela E, Roca J, Clemente JC, González A, Knights D, Knight R, Estrella S, Hernandez C, Guyonnet D, Accarino A, Santos J, Malagelada JR, Guarner F, Azpiroz F.

Gut. 2014 Mar;63(3):401-8. doi: 10.1136/gutjnl-2012-303013. Epub 2013 Jun 13.

PMID:
23766444
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Cohabiting family members share microbiota with one another and with their dogs.

Song SJ, Lauber C, Costello EK, Lozupone CA, Humphrey G, Berg-Lyons D, Caporaso JG, Knights D, Clemente JC, Nakielny S, Gordon JI, Fierer N, Knight R.

Elife (Cambridge). 2013 Apr 16;2:e00458. doi: 10.7554/eLife.00458.

PMID:
23599893
[PubMed]
Free PMC Article
8.

Gut microbiomes of Malawian twin pairs discordant for kwashiorkor.

Smith MI, Yatsunenko T, Manary MJ, Trehan I, Mkakosya R, Cheng J, Kau AL, Rich SS, Concannon P, Mychaleckyj JC, Liu J, Houpt E, Li JV, Holmes E, Nicholson J, Knights D, Ursell LK, Knight R, Gordon JI.

Science. 2013 Feb 1;339(6119):548-54. doi: 10.1126/science.1229000. Epub 2013 Jan 30.

PMID:
23363771
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets.

Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, Huttenhower C, Ley RE.

PLoS Comput Biol. 2013;9(1):e1002863. doi: 10.1371/journal.pcbi.1002863. Epub 2013 Jan 10.

PMID:
23326225
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Insights from characterizing extinct human gut microbiomes.

Tito RY, Knights D, Metcalf J, Obregon-Tito AJ, Cleeland L, Najar F, Roe B, Reinhard K, Sobolik K, Belknap S, Foster M, Spicer P, Knight R, Lewis CM Jr.

PLoS One. 2012;7(12):e51146. doi: 10.1371/journal.pone.0051146. Epub 2012 Dec 12.

PMID:
23251439
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood.

Stahringer SS, Clemente JC, Corley RP, Hewitt J, Knights D, Walters WA, Knight R, Krauter KS.

Genome Res. 2012 Nov;22(11):2146-52. doi: 10.1101/gr.140608.112. Epub 2012 Oct 12.

PMID:
23064750
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome.

Zupancic ML, Cantarel BL, Liu Z, Drabek EF, Ryan KA, Cirimotich S, Jones C, Knight R, Walters WA, Knights D, Mongodin EF, Horenstein RB, Mitchell BD, Steinle N, Snitker S, Shuldiner AR, Fraser CM.

PLoS One. 2012;7(8):e43052. doi: 10.1371/journal.pone.0043052. Epub 2012 Aug 15.

PMID:
22905200
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.

Harris JK, Caporaso JG, Walker JJ, Spear JR, Gold NJ, Robertson CE, Hugenholtz P, Goodrich J, McDonald D, Knights D, Marshall P, Tufo H, Knight R, Pace NR.

ISME J. 2013 Jan;7(1):50-60. doi: 10.1038/ismej.2012.79. Epub 2012 Jul 26.

PMID:
22832344
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Human gut microbiome viewed across age and geography.

Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, Lozupone CA, Lauber C, Clemente JC, Knights D, Knight R, Gordon JI.

Nature. 2012 May 9;486(7402):222-7. doi: 10.1038/nature11053.

PMID:
22699611
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Carbon, metals, and grain size correlate with bacterial community structure in sediments of a high arsenic aquifer.

Legg TM, Zheng Y, Simone B, Radloff KA, Mladenov N, González A, Knights D, Siu HC, Rahman MM, Ahmed KM, McKnight DM, Nemergut DR.

Front Microbiol. 2012 Mar 23;3:82. doi: 10.3389/fmicb.2012.00082. eCollection 2012.

PMID:
22470368
[PubMed]
Free PMC Article
16.

Composition of human skin microbiota affects attractiveness to malaria mosquitoes.

Verhulst NO, Qiu YT, Beijleveld H, Maliepaard C, Knights D, Schulz S, Berg-Lyons D, Lauber CL, Verduijn W, Haasnoot GW, Mumm R, Bouwmeester HJ, Claas FH, Dicke M, van Loon JJ, Takken W, Knight R, Smallegange RC.

PLoS One. 2011;6(12):e28991. doi: 10.1371/journal.pone.0028991. Epub 2011 Dec 28.

PMID:
22216154
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Microbial biogeography of public restroom surfaces.

Flores GE, Bates ST, Knights D, Lauber CL, Stombaugh J, Knight R, Fierer N.

PLoS One. 2011;6(11):e28132. doi: 10.1371/journal.pone.0028132. Epub 2011 Nov 23.

PMID:
22132229
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins.

McNulty NP, Yatsunenko T, Hsiao A, Faith JJ, Muegge BD, Goodman AL, Henrissat B, Oozeer R, Cools-Portier S, Gobert G, Chervaux C, Knights D, Lozupone CA, Knight R, Duncan AE, Bain JR, Muehlbauer MJ, Newgard CB, Heath AC, Gordon JI.

Sci Transl Med. 2011 Oct 26;3(106):106ra106. doi: 10.1126/scitranslmed.3002701.

PMID:
22030749
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Human-associated microbial signatures: examining their predictive value.

Knights D, Parfrey LW, Zaneveld J, Lozupone C, Knight R.

Cell Host Microbe. 2011 Oct 20;10(4):292-6. doi: 10.1016/j.chom.2011.09.003.

PMID:
22018228
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Linking long-term dietary patterns with gut microbial enterotypes.

Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, Bewtra M, Knights D, Walters WA, Knight R, Sinha R, Gilroy E, Gupta K, Baldassano R, Nessel L, Li H, Bushman FD, Lewis JD.

Science. 2011 Oct 7;334(6052):105-8. doi: 10.1126/science.1208344. Epub 2011 Sep 1.

PMID:
21885731
[PubMed - indexed for MEDLINE]
Free PMC Article

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