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Results: 1 to 20 of 40

1.

Transcriptome sequencing of two phenotypic mosaic Eucalyptus trees reveals large scale transcriptome re-modelling.

Padovan A, Patel HR, Chuah A, Huttley GA, Krause ST, Degenhardt J, Foley WJ, Külheim C.

PLoS One. 2015 May 15;10(5):e0123226. doi: 10.1371/journal.pone.0123226. eCollection 2015.

2.

Folding behavior of four silks of giant honey bee reflects the evolutionary conservation of aculeate silk proteins.

Maitip J, Trueman HE, Kaehler BD, Huttley GA, Chantawannakul P, Sutherland TD.

Insect Biochem Mol Biol. 2015 Apr;59:72-9. doi: 10.1016/j.ibmb.2015.02.007. Epub 2015 Feb 21.

PMID:
25712559
3.

Draft Genome of Australian Environmental Strain WM 09.24 of the Opportunistic Human Pathogen Scedosporium aurantiacum.

Pérez-Bercoff Å, Papanicolaou A, Ramsperger M, Kaur J, Patel HR, Harun A, Duan SY, Elbourne L, Bouchara JP, Paulsen IT, Nevalainen H, Meyer W, Huttley GA.

Genome Announc. 2015 Feb 12;3(1). pii: e01526-14. doi: 10.1128/genomeA.01526-14.

4.

Genetic distance for a general non-stationary markov substitution process.

Kaehler BD, Yap VB, Zhang R, Huttley GA.

Syst Biol. 2015 Mar;64(2):281-93. doi: 10.1093/sysbio/syu106. Epub 2014 Dec 9.

5.

Whole exome sequencing of extreme morbid obesity patients: translational implications for obesity and related disorders.

Paz-Filho G, Boguszewski MC, Mastronardi CA, Patel HR, Johar AS, Chuah A, Huttley GA, Boguszewski CL, Wong ML, Arcos-Burgos M, Licinio J.

Genes (Basel). 2014 Aug 25;5(3):709-25. doi: 10.3390/genes5030709.

6.

The embedding problem for markov models of nucleotide substitution.

Verbyla KL, Yap VB, Pahwa A, Shao Y, Huttley GA.

PLoS One. 2013 Jul 30;8(7):e69187. doi: 10.1371/journal.pone.0069187. Print 2013.

7.

Infection with a Virulent Strain of Wolbachia Disrupts Genome Wide-Patterns of Cytosine Methylation in the Mosquito Aedes aegypti.

Ye YH, Woolfit M, Huttley GA, Rancès E, Caragata EP, Popovici J, O'Neill SL, McGraw EA.

PLoS One. 2013 Jun 19;8(6):e66482. Print 2013.

8.

Histone H2A.Z inheritance during the cell cycle and its impact on promoter organization and dynamics.

Nekrasov M, Amrichova J, Parker BJ, Soboleva TA, Jack C, Williams R, Huttley GA, Tremethick DJ.

Nat Struct Mol Biol. 2012 Nov;19(11):1076-83. doi: 10.1038/nsmb.2424. Epub 2012 Oct 21.

PMID:
23085713
9.

Dynamic evolution of venom proteins in squamate reptiles.

Casewell NR, Huttley GA, Wüster W.

Nat Commun. 2012;3:1066. doi: 10.1038/ncomms2065.

PMID:
22990862
10.

A unique H2A histone variant occupies the transcriptional start site of active genes.

Soboleva TA, Nekrasov M, Pahwa A, Williams R, Huttley GA, Tremethick DJ.

Nat Struct Mol Biol. 2011 Dec 4;19(1):25-30. doi: 10.1038/nsmb.2161.

PMID:
22139013
11.

Statistical methods for detecting periodic fragments in DNA sequence data.

Epps J, Ying H, Huttley GA.

Biol Direct. 2011 Apr 28;6:21. doi: 10.1186/1745-6150-6-21.

12.

QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R.

Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. No abstract available.

13.

Expansion of circulating T cells resembling follicular helper T cells is a fixed phenotype that identifies a subset of severe systemic lupus erythematosus.

Simpson N, Gatenby PA, Wilson A, Malik S, Fulcher DA, Tangye SG, Manku H, Vyse TJ, Roncador G, Huttley GA, Goodnow CC, Vinuesa CG, Cook MC.

Arthritis Rheum. 2010 Jan;62(1):234-44. doi: 10.1002/art.25032.

14.

Pathological rate matrices: from primates to pathogens.

Schranz HW, Yap VB, Easteal S, Knight R, Huttley GA.

BMC Bioinformatics. 2008 Dec 19;9:550. doi: 10.1186/1471-2105-9-550.

15.

Pitfalls of the most commonly used models of context dependent substitution.

Lindsay H, Yap VB, Ying H, Huttley GA.

Biol Direct. 2008 Dec 16;3:52. doi: 10.1186/1745-6150-3-52. Erratum in: Biol Direct. 2009;(4). doi: 10.1186/1745-6150-4-10.

16.

Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics.

Caporaso JG, Smit S, Easton BC, Hunter L, Huttley GA, Knight R.

BMC Evol Biol. 2008 Dec 3;8:327. doi: 10.1186/1471-2148-8-327.

17.

Comparison of methods for estimating the nucleotide substitution matrix.

Oscamou M, McDonald D, Yap VB, Huttley GA, Lladser ME, Knight R.

BMC Bioinformatics. 2008 Dec 1;9:511. doi: 10.1186/1471-2105-9-511.

18.

Genome analysis of the platypus reveals unique signatures of evolution.

Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang SP, Heger A, Locke DP, Miethke P, Waters PD, Veyrunes F, Fulton L, Fulton B, Graves T, Wallis J, Puente XS, López-Otín C, Ordóñez GR, Eichler EE, Chen L, Cheng Z, Deakin JE, Alsop A, Thompson K, Kirby P, Papenfuss AT, Wakefield MJ, Olender T, Lancet D, Huttley GA, Smit AF, Pask A, Temple-Smith P, Batzer MA, Walker JA, Konkel MK, Harris RS, Whittington CM, Wong ES, Gemmell NJ, Buschiazzo E, Vargas Jentzsch IM, Merkel A, Schmitz J, Zemann A, Churakov G, Kriegs JO, Brosius J, Murchison EP, Sachidanandam R, Smith C, Hannon GJ, Tsend-Ayush E, McMillan D, Attenborough R, Rens W, Ferguson-Smith M, Lefèvre CM, Sharp JA, Nicholas KR, Ray DA, Kube M, Reinhardt R, Pringle TH, Taylor J, Jones RC, Nixon B, Dacheux JL, Niwa H, Sekita Y, Huang X, Stark A, Kheradpour P, Kellis M, Flicek P, Chen Y, Webber C, Hardison R, Nelson J, Hallsworth-Pepin K, Delehaunty K, Markovic C, Minx P, Feng Y, Kremitzki C, Mitreva M, Glasscock J, Wylie T, Wohldmann P, Thiru P, Nhan MN, Pohl CS, Smith SM, Hou S, Nefedov M, de Jong PJ, Renfree MB, Mardis ER, Wilson RK.

Nature. 2008 May 8;453(7192):175-83. doi: 10.1038/nature06936. Erratum in: Nature. 2008 Sep 11;455(7210):256. Nefedov, Mikhail [added]; de Jong, Pieter J [added].

19.

Loss of ACTN3 gene function alters mouse muscle metabolism and shows evidence of positive selection in humans.

MacArthur DG, Seto JT, Raftery JM, Quinlan KG, Huttley GA, Hook JW, Lemckert FA, Kee AJ, Edwards MR, Berman Y, Hardeman EC, Gunning PW, Easteal S, Yang N, North KN.

Nat Genet. 2007 Oct;39(10):1261-5. Epub 2007 Sep 9.

PMID:
17828264
20.

PyCogent: a toolkit for making sense from sequence.

Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, Eaton M, Hamady M, Lindsay H, Liu Z, Lozupone C, McDonald D, Robeson M, Sammut R, Smit S, Wakefield MJ, Widmann J, Wikman S, Wilson S, Ying H, Huttley GA.

Genome Biol. 2007;8(8):R171.

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